View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_28 (Length: 263)
Name: NF15930_low_28
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_28 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 7896036 - 7896268
Alignment:
| Q |
16 |
atgaattatgggactagctgagaatatggcctcgcccgcaagaatatgagctgtcacattcgcttctcgccgactaaactctacccttgagtttgcaaaa |
115 |
Q |
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| T |
7896036 |
atgaattatgggactagctgagaatatggcctcgtccgcaagaatatgagctgtcacattcgcttctcgccgactaaactctacccttgagtttgcaaaa |
7896135 |
T |
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| Q |
116 |
tgtgagaaca---ggttccgacatgccgtaattatgtaccaaactccattacatcgtttcgtggtgaattgaaagcttctgctgttactttggaatcggt |
212 |
Q |
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| T |
7896136 |
tgtgagaacaacaggttccgacatgccgtaattatgtaccaaactccgttacgtcgtttcgtggtgaattgaaagcttctgctgttactttggaatcggt |
7896235 |
T |
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| Q |
213 |
cacaaagtccacattatcaaatttcatgtctgt |
245 |
Q |
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| T |
7896236 |
cacaaagtccacattatcaaatttcatgtctgt |
7896268 |
T |
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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 21098133 - 21098034
Alignment:
| Q |
16 |
atgaattatgggactagctgagaatatggcctcgcccgcaagaatatgagctgtcacattcgcttctcgccgactaaactctacccttgagtttgcaaaa |
115 |
Q |
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| T |
21098133 |
atgaattatgggactagttgagaatatggcatcgctcgcaagaatatgaactgccacattcgcttgtcgccgactaaactctacccttgagtttgcaaaa |
21098034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 46884780 - 46884829
Alignment:
| Q |
61 |
atgagctgtcacattcgcttctcgccgactaaactctacccttgagtttg |
110 |
Q |
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| T |
46884780 |
atgagctatcacattggcttgtcgccgattaaactctaccctggagtttg |
46884829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 43033 - 43118
Alignment:
| Q |
30 |
tagctgagaatatggcctcgcccgcaagaatatgagctgtcacattcgcttctcgccgactaaactctacccttgagtttgcaaaa |
115 |
Q |
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| T |
43033 |
tagctgagaatatggcctcgcccacaagaatatgagttgtcacattcgcttgtcgccgactaaactctacctttgagtttgcaaaa |
43118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 8565924 - 8565885
Alignment:
| Q |
194 |
ctgttactttggaatcggtcacaaagtccacattatcaaa |
233 |
Q |
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| T |
8565924 |
ctgttactttggaatcagacacaaagtccacattatcaaa |
8565885 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 8119029 - 8119067
Alignment:
| Q |
194 |
ctgttactttggaatcggtcacaaagtccacattatcaa |
232 |
Q |
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| T |
8119029 |
ctgttactttggaatcagtcacaaaatccacattatcaa |
8119067 |
T |
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