View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15930_low_3 (Length: 606)
Name: NF15930_low_3
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Complemental strand, 34142220 - 34141715
Alignment:
| Q |
16 |
aatatttaacgggagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34142220 |
aatatttaacgggagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattgtgagcacagagaaggaaag |
34142121 |
T |
|
| Q |
116 |
gttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34142120 |
gttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaaacccttcaaaatataggccatat |
34142021 |
T |
|
| Q |
216 |
aaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctaccctagagctaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142020 |
aaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctaccctagagctaga |
34141921 |
T |
|
| Q |
316 |
cagtttaacaaaataatggtcatgcaaacatgtgttcttagtgcatatgttaaggaattcaatgtgaaagatttatcgtagaaattgtgcattcaatatt |
415 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34141920 |
cagtttaacaaaataatggtca----------tgtttttagtgcatatgttaaggaattaaatgtgaaagatttatcttagaaattgtgcattcaatatt |
34141831 |
T |
|
| Q |
416 |
taaacgtttaaaaacaaattatacttttaatttcattcacatgtggcttaaaaacacatattaacatttttct-nnnnnnnntcacttagcccatgcttg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
34141830 |
taaacgtttaaaaacaaattatacttttaatttcattcacatgtggcttaaaaacacatattaacatttctctaaaaaaaaatcacttagcccatgtttg |
34141731 |
T |
|
| Q |
515 |
tacgcaatcaaagatt |
530 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34141730 |
tacgcaatcaaagatt |
34141715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 22 - 303
Target Start/End: Complemental strand, 34136582 - 34136301
Alignment:
| Q |
22 |
taacgggagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttc |
121 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| || ||| || ||||| || |||||||| |
|
|
| T |
34136582 |
taacgagagacttgggtttattgttgcaggtttggagtaatgatgcctatgagagtgtggagcatagagtaatggtgaacaaggagaaagagaggttttc |
34136483 |
T |
|
| Q |
122 |
tattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatataaatgg |
221 |
Q |
| |
|
|||||| ||||| || |||||| |||| |||||| |||| ||||| || ||||||| |||| |||||| || ||||||||| ||||||||||||| |
|
|
| T |
34136482 |
tattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagcttacaaataagcaaaactctccaaaatataagccatataaatgg |
34136383 |
T |
|
| Q |
222 |
ggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctac |
303 |
Q |
| |
|
|| |||||| |||| |||||| | |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34136382 |
ggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatcttcaaatttatcattataagctac |
34136301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 34139537 - 34139259
Alignment:
| Q |
19 |
atttaacgggagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggtt |
118 |
Q |
| |
|
|||||||| |||| ||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||| | ||| || ||||| ||||| || |
|
|
| T |
34139537 |
atttaacgagagacttgagtttattgttacaggtttggagtaatgatgccaatgagagtgtggagcacagagcattggtgaacaaggagaaagaaagatt |
34139438 |
T |
|
| Q |
119 |
ttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatataaa |
218 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||| |||| ||||| || |||||||| || ||||||| ||||||||||||| ||| |||||| |
|
|
| T |
34139437 |
ttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagcttattaacgagcaaaacccttcaaaatataagccttataaa |
34139338 |
T |
|
| Q |
219 |
tggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattata |
297 |
Q |
| |
|
||||| || ||| ||| || |||| | |||| || ||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
34139337 |
tggggtaaattttatgtccatagaacaaacagtaacttcaagaaacaagaagaggagaatcttcaaatttatcattata |
34139259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 49 - 299
Target Start/End: Complemental strand, 34130869 - 34130619
Alignment:
| Q |
49 |
aggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcccttctttttattcccaggata |
148 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||| ||| | | | | ||||| ||||||||||| || ||||||||||| ||||| | | | |
|
|
| T |
34130869 |
aggtttggagcaatgatgcttatgaaagtgtggaacacagagtgatggttaactctgagaaagaaaggttttcaatccccttctttttcttccctgcaca |
34130770 |
T |
|
| Q |
149 |
tgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatataaatggggaaagtttcttgttcacagaaaagac |
248 |
Q |
| |
|
||| ||| |||||||||| | || ||||| | ||||||| ||| ||| ||||||| || ||||| || ||||||||||||||||| ||||||| |
|
|
| T |
34130769 |
cgacactgtagtcaaacctctcgaggagctgacaaatgaggaaaaccctccaaaatacagaccatacaattggggaaagtttcttgtcaacagaaagagt |
34130670 |
T |
|
| Q |
249 |
agcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataag |
299 |
Q |
| |
|
|||||| || |||| || | |||||||| |||||||||||||||||||| |
|
|
| T |
34130669 |
agcaatttcgagaagaaaaaggtggagaacattcaaatttatcattataag |
34130619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 34119540 - 34119455
Alignment:
| Q |
49 |
aggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcccttcttt |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| | || ||| | | |||||||| |||||||| ||||| |||||| |
|
|
| T |
34119540 |
aggtttggagcaatgatgcttatgagagtgtagagcacagggtaatggtgaactctgagaaggataggttttccattccgttcttt |
34119455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 12381966 - 12381902
Alignment:
| Q |
69 |
tatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcccttctt |
133 |
Q |
| |
|
|||||||||||||||||||||| | || | | |||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
12381966 |
tatgagagtgtggagcacagagtggttgtaaacacaaagaaagaaaggttttccattccattctt |
12381902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 12386033 - 12385969
Alignment:
| Q |
69 |
tatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcccttctt |
133 |
Q |
| |
|
|||||||||||||||||||||| | || | | |||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
12386033 |
tatgagagtgtggagcacagagtggttgtaaacacaaagaaagaaaggttttccattccattctt |
12385969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University