View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15930_low_31 (Length: 229)

Name: NF15930_low_31
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15930_low_31
NF15930_low_31
[»] chr6 (43 HSPs)
chr6 (17-218)||(26949559-26949760)
chr6 (17-218)||(26974950-26975151)
chr6 (17-215)||(26635588-26635786)
chr6 (17-215)||(26741554-26741752)
chr6 (17-216)||(26959063-26959263)
chr6 (17-218)||(25071557-25071758)
chr6 (17-184)||(26848558-26848725)
chr6 (17-196)||(26811407-26811586)
chr6 (17-178)||(27214315-27214476)
chr6 (17-178)||(27234752-27234913)
chr6 (17-218)||(27665205-27665406)
chr6 (53-218)||(26617260-26617418)
chr6 (53-218)||(26723188-26723346)
chr6 (23-111)||(26622880-26622968)
chr6 (23-111)||(26728858-26728946)
chr6 (23-178)||(27593148-27593303)
chr6 (49-178)||(27698622-27698751)
chr6 (49-178)||(27724973-27725102)
chr6 (50-123)||(28181045-28181118)
chr6 (21-178)||(28234466-28234623)
chr6 (49-178)||(28786208-28786337)
chr6 (49-178)||(28792329-28792458)
chr6 (51-123)||(28185298-28185370)
chr6 (23-178)||(27678850-27679005)
chr6 (59-178)||(27718507-27718626)
chr6 (130-218)||(24715593-24715684)
chr6 (49-178)||(27611130-27611259)
chr6 (49-178)||(28781069-28781198)
chr6 (23-111)||(26884067-26884155)
chr6 (36-144)||(27531359-27531467)
chr6 (38-144)||(26802361-26802467)
chr6 (21-178)||(27604833-27604990)
chr6 (62-178)||(25481685-25481801)
chr6 (62-178)||(25579662-25579778)
chr6 (21-113)||(28242706-28242798)
chr6 (16-144)||(31284185-31284313)
chr6 (49-144)||(27229162-27229257)
chr6 (49-178)||(27338193-27338322)
chr6 (49-178)||(27398933-27399062)
chr6 (38-75)||(28139460-28139497)
chr6 (21-178)||(28325383-28325540)
chr6 (23-144)||(29825931-29826052)
chr6 (62-178)||(26142808-26142924)
[»] chr2 (1 HSPs)
chr2 (17-218)||(17993772-17993973)
[»] chr4 (3 HSPs)
chr4 (21-216)||(5091044-5091239)
chr4 (49-112)||(18655658-18655721)
chr4 (49-112)||(18699581-18699644)
[»] scaffold0349 (2 HSPs)
scaffold0349 (49-178)||(3550-3679)
scaffold0349 (49-178)||(14483-14612)
[»] scaffold0038 (3 HSPs)
scaffold0038 (21-178)||(34627-34784)
scaffold0038 (21-113)||(42868-42960)
scaffold0038 (21-178)||(116698-116855)
[»] scaffold0019 (1 HSPs)
scaffold0019 (50-123)||(58465-58538)
[»] chr5 (1 HSPs)
chr5 (56-180)||(16688948-16689072)
[»] scaffold0277 (2 HSPs)
scaffold0277 (49-144)||(4833-4928)
scaffold0277 (49-178)||(13760-13889)
[»] scaffold1254 (1 HSPs)
scaffold1254 (49-178)||(45-174)
[»] scaffold0419 (1 HSPs)
scaffold0419 (49-178)||(7455-7584)
[»] chr1 (1 HSPs)
chr1 (49-111)||(28127862-28127924)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 26949559 - 26949760
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  26949559 ttcattagtttcagaggtaccgacactcgattcggtttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataagg 26949658  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttc 216  Q
    ||||||||| || ||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||||| || || |||||||| || |||||||||||    
T  26949659 agcttcagaaaggtgacgaaatcacaccttcactcctcaagagaattgaagaatcgagaattgccattatcgtcttttctaaggaatatgcttcttcttc 26949758  T
Q  217 at 218  Q
    ||    
T  26949759 at 26949760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 26974950 - 26975151
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||   | |||||||||||||||||    
T  26974950 ttcattagtttcagaggtaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacatcttcattgatgacaagg 26975049  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttc 216  Q
    ||||| | | ||  || |||||||||||||| || ||||||||||||||||||||||||||| ||||||| || |||||||| ||||| |||||||||||    
T  26975050 agcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagactcgaggattaccattatcgtcttctctaaagactatgcttcttcttc 26975149  T
Q  217 at 218  Q
    ||    
T  26975150 at 26975151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 26635588 - 26635786
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| || || ||||||| |||||||||||| || || ||||||||||| ||||||||||| ||||||   |||||||||||||||||||    
T  26635588 ttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaagg 26635687  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttctt 215  Q
    ||||| | | ||  ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||    
T  26635688 agcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctt 26635786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 26741554 - 26741752
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| || || ||||||| |||||||||||| || || ||||||||||| ||||||||||| ||||||   |||||||||||||||||||    
T  26741554 ttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaagg 26741653  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttctt 215  Q
    ||||| | | ||  ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||    
T  26741654 agcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctt 26741752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 26959063 - 26959263
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| || || |||||||||||| ||||||| || || ||||||||||| ||||||||||| ||||||   ||||||||||||||||| |    
T  26959063 ttcattagtttcaggggcaccgacactcgattcagtttcaccggtaacctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaag 26959162  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctc-aagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttctt 215  Q
    ||||| | | ||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  26959163 agcttaaaaaaggggatgaaatcacaccttcgcttctcaaagagcattgaagactcgaggattgccattatcgttttctctaaggaatatgcttcttctt 26959262  T
Q  216 c 216  Q
    |    
T  26959263 c 26959263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 25071557 - 25071758
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||||  ||||| ||||||||||| |    
T  25071557 ttcattagtttcaggggtaccgacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaaag 25071656  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttc 216  Q
    ||||| ||| || ||| |||||||||||||| || | ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| |||||||||||    
T  25071657 agcttaagagaggtgacgaaatcacaccttcgctccgcaagagcattgaagattcgagaattgccattatcgtcttctctaaagactatgcttcttcttc 25071756  T
Q  217 at 218  Q
    ||    
T  25071757 at 25071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 26848558 - 26848725
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| || || |||||| ||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  26848558 ttcattagtttcaggggcaccgacactagattcagtttcactggtaatctctataaagctctttctgacaatggaatccgaaccttcattgatgacaagg 26848657  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccatt 184  Q
    | |||||||  | |||||| ||||||||||| || ||||||| ||||||||||||||||||| |||||    
T  26848658 atcttcagagtggtgatgagatcacaccttcgctcctcaagaacattgaagactcgaggatttccatt 26848725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 26811407 - 26811586
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| ||||  ||||||||||  || ||||| ||  ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  26811407 ttcattagtttcaggggtatcgacactcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaagg 26811506  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctct 196  Q
    ||||||||| || ||| |||||||||||||| || ||||||||||||||| |||| |||||||||||||| || ||||||    
T  26811507 agcttcagagaggtgacgaaatcacaccttcgctcctcaagagcattgaacactctaggattgccattattgtattctct 26811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 27214315 - 27214476
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| ||||| |||||||||  ||||||||| || |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  27214315 ttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaagg 27214414  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    ||||||||| || ||| ||||||||| |||| || | |||||  ||||||||||||||||||    
T  27214415 agcttcagagaggtgacgaaatcacatcttcgctccacaagaaaattgaagactcgaggatt 27214476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 27234913 - 27234752
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| ||||| |||||||||  ||||||||| || |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  27234913 ttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaagg 27234814  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    ||||||||| || ||| ||||||||| |||| || | |||||  ||||||||||||||||||    
T  27234813 agcttcagagaggtgacgaaatcacatcttcgctccacaagaaaattgaagactcgaggatt 27234752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 27665406 - 27665205
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| ||||| ||||||||||| |||||||| || || |||||||| || ||||||||||| |||||||  |||||||||||||||||||    
T  27665406 ttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaaggaatccacaccttcattgatgacaagg 27665307  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttc 216  Q
    ||||||  |  | ||| |||||||||||||| || |  |||||||||||||| |||||||||||||||||  | ||||||||| |||| ||| |||||||    
T  27665306 agcttccaactggtgacgaaatcacaccttcactccggaagagcattgaagaatcgaggattgccattattatattctctaagaactatgctacttcttc 27665207  T
Q  217 at 218  Q
    ||    
T  27665206 at 27665205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 26617260 - 26617418
Alignment:
Q  53 ttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttctcttc 152  Q
    ||||| || |||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||      
T  26617260 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgct-- 26617357  T
Q  153 tcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttcat 218  Q
          |||||||| |||| || ||||||||| | || |||||||| ||||| |||||||||||||    
T  26617358 -----cgcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcat 26617418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 26723188 - 26723346
Alignment:
Q  53 ttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttctcttc 152  Q
    ||||| || |||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||      
T  26723188 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgct-- 26723285  T
Q  153 tcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttcat 218  Q
          |||||||| |||| || ||||||||| | || |||||||| ||||| |||||||||||||    
T  26723286 -----cgcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcat 26723346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 26622880 - 26622968
Alignment:
Q  23 agtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatga 111  Q
    ||||||||||| |  |||||||| | ||||||||||||||||||||| || || ||| |||||||||||||||  ||||||||||||||    
T  26622880 agtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatga 26622968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 26728858 - 26728946
Alignment:
Q  23 agtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatga 111  Q
    ||||||||||| |  |||||||| | ||||||||||||||||||||| || || ||| |||||||||||||||  ||||||||||||||    
T  26728858 agtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatga 26728946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 27593303 - 27593148
Alignment:
Q  23 agtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttc 122  Q
    ||||||||||| |  |||||||| | ||||||||| || |||||||| || || ||| ||||||||||||||   ||||||||||||||||| |  ||||    
T  27593303 agtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttc 27593204  T
Q  123 agatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    | | ||   ||||||||||||| || |||||||||  ||||||||| || ||||||    
T  27593203 aaagaggaaatgaaatcacaccatcacttctcaaggccattgaagagtctaggatt 27593148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 27698751 - 27698622
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || ||||||||||| || || ||| |||||||||||||||  ||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  27698751 cggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 27698652  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  |||||| || || ||||||    
T  27698651 ctcctcaaggccattgatgaatctaggatt 27698622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 27725102 - 27724973
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || ||||||||||| || || ||| |||||||||||||||  ||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  27725102 cggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 27725003  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  |||||| || || ||||||    
T  27725002 ctcctcaaggccattgatgaatctaggatt 27724973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 28181045 - 28181118
Alignment:
Q  50 ggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttca 123  Q
    ||||| |||||||||||| ||| ||| |||| |||||||||||||||||||||||| |||||||  ||||||||    
T  28181045 ggttttactggaaatctcaatagagctctttgtgacaagggaatccgaaccttcatggatgacagagagcttca 28181118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 28234466 - 28234623
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagct 120  Q
    ||||||| |||||||  |||||||| |  ||||| || | ||||||||||| ||| |||| | ||||||||||||  |||||||||||||||| ||||||    
T  28234466 ttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacaccttcattgatgacagggagct 28234565  T
Q  121 tcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    |||   ||  |||||||| ||||| || ||| |||||  ||||||||| || ||||||    
T  28234566 tcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggatt 28234623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 28786208 - 28786337
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || ||||||||||| || || ||| ||||||||||||||  |||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  28786208 cggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 28786307  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  ||| ||||| || ||||||    
T  28786308 ctcctcaaggccatcgaagaatctaggatt 28786337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 28792329 - 28792458
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || ||||||||||| || || ||| ||||||||||||||  |||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  28792329 cggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 28792428  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  ||| ||||| || ||||||    
T  28792429 ctcctcaaggccatcgaagaatctaggatt 28792458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 28185298 - 28185370
Alignment:
Q  51 gtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttca 123  Q
    |||| |||||||||||| ||| ||| |||| |||||||||||||||||||||||| |||||||  ||||||||    
T  28185298 gttttactggaaatctcaatagagctctttgtgacaagggaatccgaaccttcatggatgacagagagcttca 28185370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 27678850 - 27679005
Alignment:
Q  23 agtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttc 122  Q
    ||||||||||| |  |||||||| | ||||||||| || |||||||| || || ||| ||||||||||||||   |||||||||||| | || |  ||||    
T  27678850 agtttcagaggaagtgacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttc 27678949  T
Q  123 agatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    | | ||  |||||||||||||| || |||||||||  ||||||||| || ||||||    
T  27678950 aaagaggagatgaaatcacaccatcacttctcaaggccattgaagagtctaggatt 27679005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 27718626 - 27718507
Alignment:
Q  59 ggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttctcttctcaaga 158  Q
    ||||||||||| || || ||| |||||||||||||||  ||||||||||||||||| || ||||| | ||  |||||||||||||| || || ||||||     
T  27718626 ggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaagg 27718527  T
Q  159 gcattgaagactcgaggatt 178  Q
     |||||| || || ||||||    
T  27718526 ccattgatgaatctaggatt 27718507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 24715593 - 24715684
Alignment:
Q  130 tgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaa---ggactacgcttcttcttcat 218  Q
    ||||||||||||| |||| || ||||||||||| ||||||||||  ||||||||||| || ||||||||    ||||| |||||||||||||    
T  24715593 tgatgaaatcacatcttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcat 24715684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 27611259 - 27611130
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || ||||||||||| || || ||| |||||||||||||||  ||||||||||||||||| || ||||  | ||  |||||||||||||| ||     
T  27611259 cggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcacaccatca 27611160  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  |||||| || || ||||||    
T  27611159 ctcctcaaggccattgatgaatctaggatt 27611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 28781069 - 28781198
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || || |||||||| || || ||| ||||||||||||||  |||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  28781069 cggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 28781168  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  ||| ||||| || ||||||    
T  28781169 ctcctcaaggccatcgaagaatctaggatt 28781198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 26884067 - 26884155
Alignment:
Q  23 agtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatga 111  Q
    ||||||||||| |  |||||||| |  |||||||||||||||||||| || || ||| || ||||||||||||  ||||||||||||||    
T  26884067 agtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctcttactaacaagggaatccacaccttcattgatga 26884155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 27531467 - 27531359
Alignment:
Q  36 cggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatga 135  Q
    ||||||||||   |||||| || ||||||||||| || || ||| ||||||||||||||   ||||||||||||||||| || ||||| | ||  |||||    
T  27531467 cggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgacaatgatcttcaaagaggagatga 27531368  T
Q  136 aatcacacc 144  Q
    |||||||||    
T  27531367 aatcacacc 27531359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 26802361 - 26802467
Alignment:
Q  38 gacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaa 137  Q
    |||||||| | |||||| || || |||||||| || || |||  ||||||||||||||  ||||||||||||||||| || ||||| | ||  |||||||    
T  26802361 gacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaa 26802460  T
Q  138 tcacacc 144  Q
    |||||||    
T  26802461 tcacacc 26802467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 27604990 - 27604833
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagct 120  Q
    ||||||| || || || |||||||||| |||||| || || |||||||| || || ||| ||||||||||||| |  |||||||||||||| || || ||    
T  27604990 ttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaaaatgatct 27604891  T
Q  121 tcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    ||  | ||  ||||||||||||||  | |||||||||  |||||| || || ||||||    
T  27604890 tcgaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatt 27604833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 25481685 - 25481801
Alignment:
Q  62 aatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttctcttctcaagagca 161  Q
    ||||||||||| || |||  |||||||||||| || || ||||||||||| || || ||||| | ||  |||||||||||||| || ||| |||||  ||    
T  25481685 aatctctataaggctcttgttgacaagggaattcgtactttcattgatgaaaatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggcca 25481784  T
Q  162 ttgaagactcgaggatt 178  Q
    ||||||| || ||||||    
T  25481785 ttgaagaatctaggatt 25481801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 25579662 - 25579778
Alignment:
Q  62 aatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttctcttctcaagagca 161  Q
    ||||||||||| || |||  |||||||||||| || |||||| ||||||| || || ||||| | ||  |||||||||||||| || ||| |||||  ||    
T  25579662 aatctctataaggctcttgttgacaagggaattcgtaccttctttgatgataatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggcca 25579761  T
Q  162 ttgaagactcgaggatt 178  Q
    ||||||| || ||||||    
T  25579762 ttgaagaatctaggatt 25579778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 28242706 - 28242798
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgaca 113  Q
    ||||||| |||||||  |||||||| |  ||||| |||||||||||||| ||||  |||| | | |||||||| || ||||||||||||||||    
T  28242706 ttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgaca 28242798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 31284185 - 31284313
Alignment:
Q  16 attcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaag 115  Q
    |||| |||||||||| || |  |||||||| |  |||||||| || |||||||| || || ||| |||||||||||||||  |||||||||||||| |      
T  31284185 attccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagt 31284284  T
Q  116 gagcttcagatagatgatgaaatcacacc 144  Q
    || ||||| | ||  ||||||||||||||    
T  31284285 gaacttcaaagaggggatgaaatcacacc 31284313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 27229162 - 27229257
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacacc 144  Q
    |||||| || || |||||||| || || ||| |||||||||||||||  ||||||||||||||||| || ||||| | ||  || |||||||||||    
T  27229162 cggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcacacc 27229257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 27338322 - 27338193
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || || |||||||| || || |||  |||||||||||||  |||||||||||||||||| || ||| | | ||  ||||||| |||||| ||     
T  27338322 cggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatca 27338223  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    ||| |||||  ||||||||| || ||||||    
T  27338222 cttgtcaaggccattgaagagtctaggatt 27338193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 27399062 - 27398933
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || || |||||||| || || |||  |||||||||||||  |||||||||||||||||| || ||| | | ||  ||||||| |||||| ||     
T  27399062 cggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatca 27398963  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    ||| |||||  ||||||||| || ||||||    
T  27398962 cttgtcaaggccattgaagagtctaggatt 27398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 28139460 - 28139497
Alignment:
Q  38 gacactcgattcggtttcactggaaatctctataaagc 75  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  28139460 gacactcgtttcggtttcactggaaatctctacaaagc 28139497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 28325383 - 28325540
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagct 120  Q
    ||||||| |||||||  |||||||| |  ||||| |||||||||||||| ||||  |||| |   ||| |||| || ||||||||||||||||| || ||    
T  28325383 ttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattcgtaccttcattgatgacaaagacct 28325482  T
Q  121 tcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    |||   || ||| ||||| ||||| || ||| |||||  ||||||||| || ||||||    
T  28325483 tcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggatt 28325540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 29825931 - 29826052
Alignment:
Q  23 agtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttc 122  Q
    ||||||| |||| | || ||||| || ||||| || || |||||||| ||||| ||  ||||||||  ||| || ||||||||||||||||| |||||||    
T  29825931 agtttcacaggtgcagatactcgctttggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttc 29826030  T
Q  123 agatagatgatgaaatcacacc 144  Q
    | | ||  || |||||||||||    
T  29826031 aaagaggggacgaaatcacacc 29826052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 26142808 - 26142924
Alignment:
Q  62 aatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttctcttctcaagagca 161  Q
    ||||||||||| || |||  |||||||||||| || || ||||||||||| || || ||| | | ||  |||||||||||||| || ||| |||||  ||    
T  26142808 aatctctataaggctcttgttgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggcca 26142907  T
Q  162 ttgaagactcgaggatt 178  Q
    ||||||| || ||||||    
T  26142908 ttgaagaatctaggatt 26142924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 17993973 - 17993772
Alignment:
Q  17 ttcattagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaagg 116  Q
    |||||||||||||| ||||| || |||||||  |||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |    
T  17993973 ttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaag 17993874  T
Q  117 agcttcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttc 216  Q
    ||||||||| || ||||||||||||||| || || |||||||||||||||||||| || ||||| ||||| || ||||| |||||||| |||||||||||    
T  17993873 agcttcagagaggtgatgaaatcacaccgtcgctcctcaagagcattgaagactcaagaattgcgattatcgtcttctcaaaggactatgcttcttcttc 17993774  T
Q  217 at 218  Q
    ||    
T  17993773 at 17993772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 5091239 - 5091044
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagct 120  Q
    ||||||| ||||| || |||||||| | |||||| ||||||||||||||| |||| ||   || ||||||||| |  ||||||||||||||||  |||||    
T  5091239 ttagttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtgtcaagggaattcacaccttcattgatgacagagagct 5091140  T
Q  121 tcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggattgccattatagttttctctaaggactacgcttcttcttc 216  Q
    ||||  ||  ||  |||| ||||| || |||||||||  |||| |||| || | ||||| |||||| |||||||||||  |||| |||||||||||    
T  5091139 tcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgtcattatcgttttctctaaccactatgcttcttcttc 5091044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 18655721 - 18655658
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgac 112  Q
    |||||| |||||  ||||||| ||||| ||| |||||||||||||||  |||||||||||||||    
T  18655721 cggttttactgggcatctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18655658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 18699644 - 18699581
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgac 112  Q
    |||||| |||||  ||||||| ||||| ||| |||||||||||||||  |||||||||||||||    
T  18699644 cggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18699581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 3679 - 3550
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || ||||||||||| || || ||| |||||||||||||||  ||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  3679 cggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 3580  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  |||||| || || ||||||    
T  3579 ctcctcaaggccattgatgaatctaggatt 3550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 14612 - 14483
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || ||||||||||| || || ||| |||||||||||||||  ||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  14612 cggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 14513  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  |||||| || || ||||||    
T  14512 ctcctcaaggccattgatgaatctaggatt 14483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 34627 - 34784
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagct 120  Q
    ||||||| |||||||  |||||||| |  ||||| || | ||||||||||| ||| |||| | ||||||||||||  |||||||||||||||| ||||||    
T  34627 ttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacaccttcattgatgacagggagct 34726  T
Q  121 tcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    |||   ||  |||||||| ||||| || ||| |||||  ||||||||| || ||||||    
T  34727 tcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggatt 34784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 42868 - 42960
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgaca 113  Q
    ||||||| |||||||  |||||||| |  ||||| |||||||||||||| ||||  |||| | | |||||||| || ||||||||||||||||    
T  42868 ttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgaca 42960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 116698 - 116855
Alignment:
Q  21 ttagtttcagaggtacggacactcgattcggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagct 120  Q
    ||||||| |||||||  |||||||| |  ||||| |||||||||||||| ||||  |||| |   ||| |||| || ||||||||||||||||| || ||    
T  116698 ttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattcgtaccttcattgatgacaaagacct 116797  T
Q  121 tcagatagatgatgaaatcacaccttctcttctcaagagcattgaagactcgaggatt 178  Q
    |||   || ||| ||||| ||||| || ||| |||||  ||||||||| || ||||||    
T  116798 tcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggatt 116855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 58538 - 58465
Alignment:
Q  50 ggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttca 123  Q
    ||||| |||||||||||||| | ||| |||| |||||||||||||||||||||||| |||||||  ||||||||    
T  58538 ggttttactggaaatctctacagagctctttgtgacaagggaatccgaaccttcatggatgacagagagcttca 58465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 16688948 - 16689072
Alignment:
Q  56 actggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttctcttctca 155  Q
    ||||| ||||| || ||||| || | |||||||||||||||   |||||||||||||||||| ||||||| || |||  |||||||||| || ||| |||    
T  16688948 actggtaatctgtacaaagctctatgtgacaagggaatccgtgtcttcattgatgacaaggaacttcagagaggtgacaaaatcacaccatcacttatca 16689047  T
Q  156 agagcattgaagactcgaggattgc 180  Q
    ||   ||||||||||| ||||||||    
T  16689048 aggcaattgaagactcaaggattgc 16689072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 4928 - 4833
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacacc 144  Q
    |||||| || ||||||||||| || || ||| ||||||||||||||  |||||||||||||||||| || ||||| | ||  ||||||||||||||    
T  4928 cggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacc 4833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 13889 - 13760
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || || |||||||| || || ||| ||||||||||||||  |||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  13889 cggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 13790  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  ||| ||||| || ||||||    
T  13789 ctcctcaaggccatcgaagaatctaggatt 13760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 174 - 45
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || || |||||||| || || ||| ||||||||||||||  |||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  174 cggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 75  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  ||| ||||| || ||||||    
T  74 ctcctcaaggccatcgaagaatctaggatt 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 7455 - 7584
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatgacaaggagcttcagatagatgatgaaatcacaccttct 148  Q
    |||||| || || |||||||| || || ||| ||||||||||||||  |||||||||||||||||| || ||||| | ||  |||||||||||||| ||     
T  7455 cggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 7554  T
Q  149 cttctcaagagcattgaagactcgaggatt 178  Q
    || ||||||  ||| ||||| || ||||||    
T  7555 ctcctcaaggccatcgaagaatctaggatt 7584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 28127924 - 28127862
Alignment:
Q  49 cggtttcactggaaatctctataaagccctttctgacaagggaatccgaaccttcattgatga 111  Q
    ||||||||||||  ||||||| || ||||||| ||||||||||||||  || |||||||||||    
T  28127924 cggtttcactggccatctctacaaggccctttatgacaagggaatccacacattcattgatga 28127862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University