View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_4 (Length: 565)
Name: NF15930_low_4
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 51524691 - 51524998
Alignment:
| Q |
13 |
cagagatgaggacacaaagttgttgcaggaaaatggtgtgacggctgatgctgttgtggctgctgatggaagtggagactacactaaggtgatggatgcc |
112 |
Q |
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| T |
51524691 |
cagagatgaggacacaaagttgttgcaggcaaatggtgtgacggctgatgctgttgtggctgctgatggaagtggagactacgctaaggtgatggatgcc |
51524790 |
T |
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| Q |
113 |
gtatcggcagcacctgaaagcagcatgaaaagatatgtaatatatgtgaaaaaaggtgtttatgttgaaaatgttgagattaagaagaagaaatggaata |
212 |
Q |
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| T |
51524791 |
gtatcggcagcacctgaaagcagcatgaaaagatatgtaatatatgtgaaaaaaggtgtttatgttgaaaatgttgagattaagaagaagaaatggaata |
51524890 |
T |
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| Q |
213 |
tcatgttgattggtgaaggtatggatgctactattatctccggcagtcggaattatgtggacggttcgacaactttccggtcagctacctttggtaagaa |
312 |
Q |
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| T |
51524891 |
tcatgttgattggtgaaggcatggatgctactatcatctccggcagtcggaattatgtggacggttcgacaactttccggtcagctacctttggtaagaa |
51524990 |
T |
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| Q |
313 |
tgattaca |
320 |
Q |
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|||||||| |
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| T |
51524991 |
tgattaca |
51524998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 56 - 311
Target Start/End: Original strand, 51530930 - 51531185
Alignment:
| Q |
56 |
gctgatgctgttgtggctgctgatggaagtggagactacactaaggtgatggatgccgtatcggcagcacctgaaagcagcatgaaaagatatgtaatat |
155 |
Q |
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| T |
51530930 |
gctgatgctattgtggcggctgatgggagtgggaactacactacagtgatggatgccgtattggcagcacctaaattcagcatgagaagatatgttatat |
51531029 |
T |
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| Q |
156 |
atgtgaaaaaaggtgtttatgttgaaaatgttgagattaagaagaagaaatggaatatcatgttgattggtgaaggtatggatgctactattatctccgg |
255 |
Q |
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| T |
51531030 |
atgtgaaaaaaggtgtatatgttgagaatgttgagattgataggaagaaatggaatattatgatgattggtgaaggtatggatgctactattatctccgg |
51531129 |
T |
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| Q |
256 |
cagtcggaattatgtggacggttcgacaactttccggtcagctacctttggtaaga |
311 |
Q |
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| T |
51531130 |
tagtcggaatcgtgtggatggttggactactttccgatcagctacctttggtaaga |
51531185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 393 - 542
Target Start/End: Original strand, 51525091 - 51525238
Alignment:
| Q |
393 |
taataagggaactgatgcatcaggttgcattgggttatgatagaatattctgttccatgtttaaggaagctaaaaacaagagcttgatttaaaagctaaa |
492 |
Q |
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| T |
51525091 |
taataagggaactgatgcatcaggttgcattgggttatgatagaatattctgttccatgtttaaggaagctaaaaacaagagcttgatttaaaagctaaa |
51525190 |
T |
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| Q |
493 |
cataataaaatgtggaaaattaaaggaacaaatcagtggtagtgatattt |
542 |
Q |
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| T |
51525191 |
cataataaaatgtgg-aaattaaaggaacaaatca-tggtagtgatattt |
51525238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 19512328 - 19512212
Alignment:
| Q |
134 |
agcatgaaaagatatgtaatatatgtgaaaaaaggtgtttatgttgaaaatgttgagattaagaagaagaaatggaatatcatgttgattggtgaaggta |
233 |
Q |
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||||||||| ||||||| ||||| || || | |||||||||| ||||||||||||| || |||||||||||||||||| ||||| || | || || |||| |
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| T |
19512328 |
agcatgaaacgatatgtgatatacgtaaagagaggtgtttatattgaaaatgttgaaatcaagaagaagaaatggaatctcatgatggtcggagatggta |
19512229 |
T |
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| Q |
234 |
tggatgctactattatc |
250 |
Q |
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|| |||| || |||||| |
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| T |
19512228 |
tgaatgccacaattatc |
19512212 |
T |
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