View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_5 (Length: 564)
Name: NF15930_low_5
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 30553604 - 30553385
Alignment:
| Q |
14 |
caaaggccaaactcaaccacttggtcatattgaactttagtcattaaaaatacgatatatatatactttaatgagatagcctccaaatctgaaacaagtg |
113 |
Q |
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| T |
30553604 |
caaaggccaaactcaaccacttggtcatattgaactttagtcattaaaaatacgatatatata--ctttaatgagatagcctccaaatctgaaacaagtg |
30553507 |
T |
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| Q |
114 |
ggaagaaagttgtttccaaataaatatttgaaatagctacgtggatccatttgtggttccctcaacattattatgttgatgtcatttaatttgcataagt |
213 |
Q |
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| T |
30553506 |
ggaagaaagttgtttccaaataaatatttgaaatagctacgtggatccatttgtggctccctcaacattattatgttgatgtcatttaatttgcataagt |
30553407 |
T |
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| Q |
214 |
agtcacaactcagtctagctac |
235 |
Q |
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| T |
30553406 |
agtcacaactcagtctagctac |
30553385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 371 - 552
Target Start/End: Complemental strand, 30548281 - 30548082
Alignment:
| Q |
371 |
taaaataattataattaagatgcggaatagtacttataattcttttttcataat-------gcaagatatttacaatataattt-----------gtcaa |
452 |
Q |
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| T |
30548281 |
taaaataattataattaagatgcggaatagtacttataattcttttttcataattaatattgcaagatatttacaatataatttacatataatttgtcaa |
30548182 |
T |
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| Q |
453 |
ccgtacttgttcnnnnnnntaatttgtcaaccgtagcattgaaaatttaaacctaaattacacgtaggcnnnnnnnccaaccatgtgtatcaactatagt |
552 |
Q |
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| T |
30548181 |
ccgtacttgttcaaaaaaataattagtcaaccgtagcattgaaaatttaaacctaaattacacgtaggcaaaaaaaccaaccatttgtatcaactatagt |
30548082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 30553319 - 30553249
Alignment:
| Q |
301 |
gtcttcctgaaccaatgcataaaatatcaacttataaaagaaacctctactacgtaccaagtactcataat |
371 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30553319 |
gtcttcctgaaccaatgcataaaataacaacctataaaagaaacctctactacgtaccaagtactcataat |
30553249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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