View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_6 (Length: 500)
Name: NF15930_low_6
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Original strand, 12087864 - 12088344
Alignment:
| Q |
12 |
gtgagatgaatgccattccttctcgccaataaggtggttgctg--------ccggtgccgagctgaaattctagaggtttgaagaattatctgataggtt |
103 |
Q |
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| T |
12087864 |
gtgaaatgaatgccattccttctcgccaataaggtggttgctggcttgctgccggtgccgagctgaaattctagaggtttgaagaattatctgagaggtt |
12087963 |
T |
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| Q |
104 |
tcggattgcacgagaagaatgttcttagttgnnnnnnnttataaaagggatttgcacatgttgcaactattgttttctatcactttaaagtgttctttct |
203 |
Q |
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| T |
12087964 |
tcggattgtacgagaagaatgttcttagttgaaaaaaattataaaagggatttgcacatgttgcaactattgttttctatcactttaaagtgttctttct |
12088063 |
T |
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| Q |
204 |
tatcttgtgctcgattttgtgtaacgaaagcaaattatagcaagttggttgtatagttgaattcatcaaaggttttatgttaaccaaaattgctctattt |
303 |
Q |
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| T |
12088064 |
tatcttgtgctcgattttgtgtaacgaaagcaaattacagcaagttggttgtatagttgaattcatcaaaggttttatgttaaccaaaattgctctattt |
12088163 |
T |
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| Q |
304 |
gaaactggttgactttgtctatgtgtatacaaaaaatgacaatatcataatatgtaagtgaagatgcttgtgctacatgtcaaaatgtcaaaacaaattg |
403 |
Q |
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| T |
12088164 |
gaaactggttgactttgtctgtgtgtatacaaaaaatgacaatatcataatatgtaagtgatgatgcttgtgctacatgtcaaaatgtcaaaacaaattg |
12088263 |
T |
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| Q |
404 |
ttgggactagggatcatagacatggataatatttcaaaacaattatagaggtggttggaatgatatgacattcgatgattt |
484 |
Q |
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| T |
12088264 |
ttgggactagggatcatagacatggataatatttcaaaaaaattatagaggtggttggaatgatatgacattcgatgattt |
12088344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 11783625 - 11783575
Alignment:
| Q |
435 |
tttcaaaacaattatagaggtggttggaatgatatgacattcgatgatttt |
485 |
Q |
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| T |
11783625 |
tttcaaaactattatagaggtggttggaatgatatgccattcgatgatttt |
11783575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 11791442 - 11791393
Alignment:
| Q |
435 |
tttcaaaacaattatagaggtggttggaatgatatgacattcgatgattt |
484 |
Q |
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| T |
11791442 |
tttcaaaacaattatagaggtggttggaataatatgccattcaatgattt |
11791393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 504206 - 504142
Alignment:
| Q |
255 |
tatagttgaattcatcaaaggttttatgttaaccaaaattgctctatttgaaactggttgacttt |
319 |
Q |
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| T |
504206 |
tatagttgaattcatccaaggctgtatgttaaccggaattgctctattagaaacaggttgacttt |
504142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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