View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_8 (Length: 477)
Name: NF15930_low_8
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 31856105 - 31855900
Alignment:
| Q |
22 |
tatacaaataggatcgatgatgtaaccatgcaacaattattcattaccctaatgaaaaacnnnnnnnncctgaatcatcgcttggaaaacat-------- |
113 |
Q |
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| T |
31856105 |
tataccaataggattgatgatgtaaccatgcaacaattattcattaccctaatgaaaaacttttttttccttaatcatcgcttggataacatgtatccta |
31856006 |
T |
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| Q |
114 |
---cga---------gaaataaaaatacgataaaaacatatatcccaccaaaattgaaataatttttatccaaggtggataggagtcaattacaatttat |
201 |
Q |
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| T |
31856005 |
aaccgattaaaaagtgaaataaaaatatgataaaaaagtgtatcccaccaaaattgaaatgatttttatccaaggtggatatgagttaattataatatat |
31855906 |
T |
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| Q |
202 |
gaagca |
207 |
Q |
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| T |
31855905 |
gaagca |
31855900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 31855756 - 31855710
Alignment:
| Q |
416 |
caaatttgaatcattcattgcttaccattaacaaagaacttgaattt |
462 |
Q |
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| T |
31855756 |
caaatttgaatcattcattgcttaccattaacaaagaacttgaattt |
31855710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 31579256 - 31579211
Alignment:
| Q |
260 |
ataattcaatgtaattatgtgctggtgtcggacacgatacatgtcc |
305 |
Q |
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| T |
31579256 |
ataattcagtgtaattatgtgtcggtgtcggacacgacacatgtcc |
31579211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 14248856 - 14248900
Alignment:
| Q |
260 |
ataattcaatgtaattatgtgctggtgtcggacacgatacatgtc |
304 |
Q |
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| T |
14248856 |
ataattcagtgtaattatgtgtcagtgtcggacacgatacatgtc |
14248900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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