View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_high_1 (Length: 584)
Name: NF15931_high_1
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 98 - 567
Target Start/End: Original strand, 36448120 - 36448589
Alignment:
| Q |
98 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448120 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
36448219 |
T |
|
| Q |
198 |
ggaactgaagtaaactagatagaaatcacaacctccatttccaaaaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448220 |
ggaactgaagtaaactagatagaaatcacaacctccatttccataaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
36448319 |
T |
|
| Q |
298 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448320 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
36448419 |
T |
|
| Q |
398 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcccgattctcctatcctcatcccgaaccacgcgcttcgtagtttaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448420 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcctgattctcctatcctcatcccgaaccacgcgcttcgtagtttaa |
36448519 |
T |
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| Q |
498 |
tttctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccct |
567 |
Q |
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| T |
36448520 |
tctctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccct |
36448589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 2660305 - 2660174
Alignment:
| Q |
311 |
gaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatccaacgttggcttg |
410 |
Q |
| |
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|||||||| || || ||||| || || ||||| |||||||| || || |||||||| |||||||| || || || ||| |||||||||||| ||||||| |
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| T |
2660305 |
gaacacttgaagtgcccaatttcgcttgaaattatgtccgatccggttatcctctcctccggtcagacctttgaccgttcttcaatccaacaatggcttg |
2660206 |
T |
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| Q |
411 |
acgaaggtcatcgtacttgtccaattaccaaa |
442 |
Q |
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|| |||||| || | |||||||| |||||| |
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| T |
2660205 |
acctaggtcaccggaaatgtccaatcaccaaa |
2660174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 15972047 - 15972087
Alignment:
| Q |
311 |
gaacacttcaaatgtccaatctcactcgaaataatgtccga |
351 |
Q |
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|||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
15972047 |
gaacacttcaaatgtccaatttcacttgaaatcatgtccga |
15972087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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