View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_high_10 (Length: 415)
Name: NF15931_high_10
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 41217450 - 41217062
Alignment:
| Q |
9 |
gaagaatatcaaaacgggggaagacgacagaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctggtcctggtggcttc |
108 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41217450 |
gaagaaaatcaaaacgggggaagacgacggaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctggtcctggtggcttc |
41217351 |
T |
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| Q |
109 |
tggagccctttcctagatgattctattgtaccaacatctgaaaagacgaaatggaacgaaacatttttcaatatccttcaatgaaggagttattaatgga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41217350 |
tggagccctttcctagatgattctattgtaccaacatctgaaaagacgaaatggaacgaaacatttttcaatatccttcaatgaaggagttattaatgga |
41217251 |
T |
|
| Q |
209 |
cactagacttagtagttgaggtaaccttgaaccaagttatatatatctcttttcatgtaatttggtactgttagaagcactgatatcaattgttacttga |
308 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41217250 |
cactagacttagcagttgaggtaaccttgaaccaagttatatatatctcttttcatgtaatttggtactgttagacgcactgatatcaattgttacttga |
41217151 |
T |
|
| Q |
309 |
tttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgactaagtgatgttatcattctatttcaatggttacaat |
397 |
Q |
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| T |
41217150 |
tttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgactaagtgatgttatcattctatttcaatggtaacaat |
41217062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 41223230 - 41222888
Alignment:
| Q |
9 |
gaagaatatcaaaacgggggaagacgacagaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctggtcctggtggcttc |
108 |
Q |
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| T |
41223230 |
gaagaaaatcaaaataggggaagacgatagaggttccatccataacttagcaagaccaccaacaaaagtgagctgggttttgtctgatcctagaggcttc |
41223131 |
T |
|
| Q |
109 |
tggagccctttcctagatgattctattgtaccaacatctgaaaagacgaaatggaacgaaacatttttcaatatccttcaatgaaggagttattaatgga |
208 |
Q |
| |
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| T |
41223130 |
tggaaccctttcctcgatgattctgttgtaccggcatctgaaaagaggaaatggtccgaagca-ttttcaatatccatcaatgaaggagctactagtg-- |
41223034 |
T |
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| Q |
209 |
cactagacttagtagttgaggtaaccttgaaccaagttatatatatctcttttcatgtaatttggtactgttagaagcactgatatcaattgttacttga |
308 |
Q |
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| T |
41223033 |
-----gagttaataattgaggtaagcttgaacctagttaaata----tgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttatttga |
41222943 |
T |
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| Q |
309 |
tttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgacta |
363 |
Q |
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||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
41222942 |
tttcatccaactttgcaggattcaacatggagaagacatgacatattggtgacta |
41222888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 16233789 - 16234132
Alignment:
| Q |
9 |
gaagaatatcaaaacgggggaagacgacagaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctggtcctggtggcttc |
108 |
Q |
| |
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|||||| ||||||| ||||||| ||| | || |||||||||||||||| ||| || ||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
16233789 |
gaagaaaatcaaaataggggaagccgataaagattccatccataacttagcaagactaccaacaaaagtaagctgggttttgtctgatcctagaggcttc |
16233888 |
T |
|
| Q |
109 |
tggagccctttcctagatgattctattgtaccaacatct-gaaaagacgaaatggaacgaaacatttttcaatatccttcaatgaaggagttattaatgg |
207 |
Q |
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|||| |||| |||| ||||||||||||||||| ||||| ||||||| ||||||| | || || |||||||||||| |||||||||||| || | || |
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| T |
16233889 |
tggaaccctatcctcgatgattctattgtaccggcatctggaaaagaggaaatggtcccaagca-ttttcaatatccatcaatgaaggagctacttgtg- |
16233986 |
T |
|
| Q |
208 |
acactagacttagtagttgaggtaaccttgaaccaagttatatatatctcttttcatgtaatttggtactgttagaagcactgatatcaattgttacttg |
307 |
Q |
| |
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|| ||| || ||||||||| |||||||| ||||| ||| | ||| |||||||||| | | | |||||||| ||| ||| |||||| | | |
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| T |
16233987 |
------gagttaataattgaggtaagcttgaacctagttaaata----tgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttattgg |
16234076 |
T |
|
| Q |
308 |
atttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgacta |
363 |
Q |
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|||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
16234077 |
atttcatccaactttgcaggattcaacatggagaagacatgacatattggtgacta |
16234132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 1598423 - 1598606
Alignment:
| Q |
9 |
gaagaatatcaaaacgggggaagacgacagaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctggtcctggtggcttc |
108 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
1598423 |
gaagaaaatcaaaacgggggaagacgatagaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctagtcccgagggcttc |
1598522 |
T |
|
| Q |
109 |
tggagccctttcctagatgattctattgtaccaacatctgaaaagacgaaatggaacgaaacatttttcaatatccttcaatgaa |
193 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||||||||| ||||||| |||| || ||||| |||||| |||||||| |
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| T |
1598523 |
tggaaccctttcctagatgattatattgtaccagcatctgaaaagaggaaatggtccgaagca-ttttcgatatccatcaatgaa |
1598606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 1598698 - 1598780
Alignment:
| Q |
281 |
agaagcactgatatcaattgttacttgatttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgacta |
363 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||| | |||||||||| | ||| |||||||||||||||||| |||||| |
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| T |
1598698 |
agaaacactgatatcacttgttacttgatttcatccatctttgcaggatttaacatggagaagacatgacatattgttgacta |
1598780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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