View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15931_high_12 (Length: 400)

Name: NF15931_high_12
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15931_high_12
NF15931_high_12
[»] chr1 (6 HSPs)
chr1 (16-305)||(27481799-27482081)
chr1 (16-304)||(27488997-27489276)
chr1 (325-383)||(9316096-9316154)
chr1 (325-383)||(21814953-21815011)
chr1 (329-383)||(27048261-27048315)
chr1 (325-383)||(47294155-47294213)
[»] chr6 (7 HSPs)
chr6 (319-383)||(14118586-14118650)
chr6 (319-383)||(14122544-14122608)
chr6 (319-382)||(7826123-7826186)
chr6 (319-382)||(10800600-10800663)
chr6 (325-383)||(18765823-18765881)
chr6 (319-382)||(24908556-24908619)
chr6 (325-383)||(1051355-1051413)
[»] chr5 (2 HSPs)
chr5 (319-383)||(9335177-9335241)
chr5 (319-382)||(40821357-40821420)
[»] chr3 (5 HSPs)
chr3 (319-383)||(18866912-18866976)
chr3 (319-382)||(4675061-4675124)
chr3 (325-383)||(4501252-4501310)
chr3 (325-375)||(4506578-4506628)
chr3 (325-383)||(27900664-27900722)
[»] chr7 (6 HSPs)
chr7 (319-382)||(41542595-41542658)
chr7 (319-382)||(28442581-28442644)
chr7 (325-383)||(9701926-9701984)
chr7 (325-383)||(41454942-41455000)
chr7 (325-383)||(43364383-43364441)
chr7 (325-383)||(48455520-48455578)
[»] chr2 (3 HSPs)
chr2 (319-383)||(33033885-33033949)
chr2 (319-382)||(44611378-44611441)
chr2 (325-383)||(43669907-43669966)
[»] chr8 (4 HSPs)
chr8 (325-387)||(44245932-44245994)
chr8 (325-383)||(9906936-9906994)
chr8 (337-383)||(38657391-38657437)
chr8 (325-366)||(5064045-5064086)
[»] scaffold0045 (2 HSPs)
scaffold0045 (319-383)||(2768-2833)
scaffold0045 (319-383)||(9150-9215)
[»] scaffold0265 (1 HSPs)
scaffold0265 (325-383)||(17798-17856)
[»] chr4 (2 HSPs)
chr4 (325-383)||(13568165-13568223)
chr4 (325-383)||(667701-667759)
[»] scaffold0291 (1 HSPs)
scaffold0291 (325-383)||(1736-1794)
[»] scaffold0012 (1 HSPs)
scaffold0012 (325-383)||(202536-202594)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 27482081 - 27481799
Alignment:
Q  16 atatgtacttctatttggctgatcgactaccacacggaaaatattcatcatattcctacgatttgtaattgtttaatgcatgatttcttcatgatatata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27482081 atatgtacttctatttggctgatcgactaccacacggaaaatattcatcatattcctatgatttgtaattgtttaatgcatgatttcttcatgatatata 27481982  T
Q  116 gtattgaacgtgtcgtgtcaacattaggtgnnnnnnnaatagaaagagttcaaatcacactggg---attgttaaatgtttttgtgctccgttttaaata 212  Q
    |||||||            |||||||||||       |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  27481981 gtattga------------aacattaggtgttttctcaatagaaagagttcaaatcacactgggatcattgttaaatgtttttgtgctccgttttaaata 27481894  T
Q  213 ataatgattttcctcatttcaaatttttaat--nnnnnnntgtgtttaagaacaatggtaactattgctttaagtggaaaggggtttgtaactag 305  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  27481893 ataatgattttcctcatttcaaatttttaataaaaaaaaatgtgtttaagaacaatggtaattattgctttaagtggaaagggatttgtaactag 27481799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 27489276 - 27488997
Alignment:
Q  16 atatgtacttctatttggctgatcgactaccacacggaaaatattcatcatattcctacgatttgtaattgtttaatgcatgatttcttcatgatatata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  27489276 atatgtacttctatttggctgatcgactaccacacggaaaatattcattatattcctatgatttgtaattgtttaatgcatgatttattcatgatatata 27489177  T
Q  116 gtattgaacgtgtcgtgtcaacattaggtgnnnnnnnaatagaaagagttcaaatcacactgggat---tgttaaatgtttttgtgctccgttttaaata 212  Q
    ||||||||            ||||||||||       |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  27489176 gtattgaa------------acattaggtgttttctcaatagaaagagttcaaatcacactgggatcattgttaaatgtttttgtgctccgttttaaata 27489089  T
Q  213 ataatgattttcctcatttcaaatttttaatnnnnnnntgtgtttaagaacaatggtaactattgctttaagtggaaaggggtttgtaacta 304  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  27489088 ataatgattttcctcatttcaaatttttaataaaaaaatgtgtttaagaacaatggtaactattgctttaagtgcaaagcggtttgtaacta 27488997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 9316096 - 9316154
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9316096 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9316154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 21814953 - 21815011
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  21814953 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 21815011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 27048261 - 27048315
Alignment:
Q  329 gtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||    
T  27048261 gtattctcggattagtgttggagatcctaattatcaattgatattatcacatatt 27048315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 47294155 - 47294213
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    |||||||||||  ||||||||||||  || ||||||||||||||||||||| |||||||    
T  47294155 atacgtattctaagattagtgttgcgaattctaattatcaattgatattatcacatatt 47294213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 14118650 - 14118586
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  14118650 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacatatt 14118586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 14122608 - 14122544
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  14122608 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacatatt 14122544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 7826123 - 7826186
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7826123 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 7826186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 10800663 - 10800600
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  10800663 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 10800600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 18765823 - 18765881
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  18765823 atacgtattcttggattagtgttgcggattctaattatcaattgatattatcacatatt 18765881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 24908556 - 24908619
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  24908556 ctattcatatgtattctcggattagtgttgcaaatcctaactattaattgatattatcacatat 24908619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 1051355 - 1051413
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    |||| |||||| |||||||| |||||||| ||||||||||||||||||||| |||||||    
T  1051355 atacatattctaggattagttttgcagattctaattatcaattgatattatcacatatt 1051413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 9335241 - 9335177
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  9335241 ctattcatacgtattctcggattagtgttgcatatcctaattatcaattgatattatcacatatt 9335177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 40821420 - 40821357
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  40821420 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 40821357  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 18866912 - 18866976
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  18866912 ctattcatacgtattctcggattagtattgcagatcctaattatcaattgatattatcacatatt 18866976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 4675061 - 4675124
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  4675061 ctattcatacgtattctcggattagtgttgcagatcttaattatcaattgatattatcacatat 4675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 4501252 - 4501310
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  4501252 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 4501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 4506578 - 4506628
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattat 375  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  4506578 atacgtattctaggattagtgttgcggattctaattatcaattgatattat 4506628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 27900664 - 27900722
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||   || ||||||||||||||||||||| |||||||    
T  27900664 atacgtattctcggattagtgttgtgtattctaattatcaattgatattatcacatatt 27900722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 41542595 - 41542658
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  41542595 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 41542658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 28442581 - 28442644
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||    
T  28442581 ctattcatatgtattctcggattagtgttgcatatcttaattatcaattgatattatcacatat 28442644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 9701926 - 9701984
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9701926 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9701984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 41455000 - 41454942
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||||||||||| |||||||    
T  41455000 atacgtattctaggattaatgttgcggattctaattatcaattgatattatcacatatt 41454942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 43364383 - 43364441
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| |||||||    
T  43364383 atacgtactcttggattagtgttgcggattctaattatcaagtgatattatcacatatt 43364441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 48455520 - 48455578
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||| ||| ||| ||||||||| ||||||||||| |||||||    
T  48455520 atacgtattctcggattagtgatgcggattctaattatcgattgatattatcacatatt 48455578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 33033885 - 33033949
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  33033885 ctattcatacatattctcggattagtgttgccgatcctaattatcaattgatattatcacatatt 33033949  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 44611378 - 44611441
Alignment:
Q  319 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 382  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  44611378 ctattcatatgtattctcggattagtgttgcaaatcctaattatcaattgatattatcacatat 44611441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 43669907 - 43669966
Alignment:
Q  325 atacgtattcttggatta-gtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||| |||||||    
T  43669907 atacgtattctcggattaagtgttgcggattctaattatcaattgatattatcacatatt 43669966  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 44245994 - 44245932
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatattcttc 387  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||||    
T  44245994 atacgtattcttggattagtgttgcggattctaactatcaattgatattatcacatattcttc 44245932  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 9906994 - 9906936
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9906994 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9906936  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 38657391 - 38657437
Alignment:
Q  337 ggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  38657391 ggattagtgttgcggattctaattatcaattgatattatcacatatt 38657437  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 5064086 - 5064045
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaat 366  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  5064086 atacgtattctcggattagtgttgcggattctaattatcaat 5064045  T

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Target: scaffold0045 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 2833 - 2768
Alignment:
Q  319 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  2833 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacatatt 2768  T

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Target: scaffold0045; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 9215 - 9150
Alignment:
Q  319 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  9215 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacatatt 9150  T

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Target: scaffold0265 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 17856 - 17798
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  17856 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 17798  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 13568165 - 13568223
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  13568165 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 13568223  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 667759 - 667701
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||||||||  |||  |||||||||||||||||||| |||||||    
T  667759 atacgtattctcggattagtgttgtggattataattatcaattgatattatcacatatt 667701  T

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Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 1794 - 1736
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    |||||||| || ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  1794 atacgtatactcggattagtgttgcggattctaattatcaattgatattatcacatatt 1736  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 202536 - 202594
Alignment:
Q  325 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 383  Q
    ||||||||||| ||||||| ||||| ||| |||||| ||||||| |||||| |||||||    
T  202536 atacgtattctcggattagcgttgcggattctaattctcaattggtattatcacatatt 202594  T

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