View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15931_high_15 (Length: 367)

Name: NF15931_high_15
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15931_high_15
NF15931_high_15
[»] chr6 (5 HSPs)
chr6 (14-362)||(1512043-1512391)
chr6 (255-311)||(5477352-5477408)
chr6 (258-325)||(12200397-12200464)
chr6 (108-185)||(5477478-5477555)
chr6 (109-182)||(12200489-12200562)
[»] scaffold0169 (1 HSPs)
scaffold0169 (15-362)||(22704-23051)
[»] chr3 (5 HSPs)
chr3 (14-362)||(1538936-1539284)
chr3 (29-362)||(22522542-22522875)
chr3 (14-362)||(54332481-54332829)
chr3 (14-325)||(6032809-6033124)
chr3 (85-362)||(19792108-19792387)
[»] chr8 (6 HSPs)
chr8 (14-354)||(44587405-44587745)
chr8 (139-350)||(25938915-25939126)
chr8 (151-362)||(896730-896941)
chr8 (162-362)||(40796448-40796648)
chr8 (260-323)||(30273684-30273747)
chr8 (255-348)||(7176112-7176205)
[»] chr7 (6 HSPs)
chr7 (14-180)||(2276018-2276186)
chr7 (207-324)||(2274837-2274954)
chr7 (259-362)||(27804666-27804769)
chr7 (108-173)||(27804855-27804920)
chr7 (256-354)||(20463550-20463646)
chr7 (261-310)||(10037735-10037784)
[»] chr5 (3 HSPs)
chr5 (109-362)||(14489290-14489543)
chr5 (245-325)||(27039787-27039865)
chr5 (251-347)||(34673768-34673864)
[»] chr1 (8 HSPs)
chr1 (128-343)||(3158400-3158614)
chr1 (259-362)||(19477368-19477471)
chr1 (255-328)||(46149305-46149378)
chr1 (139-297)||(12928525-12928683)
chr1 (259-318)||(3215058-3215117)
chr1 (255-350)||(30091945-30092040)
chr1 (123-173)||(3214922-3214972)
chr1 (139-224)||(19477248-19477333)
[»] chr2 (7 HSPs)
chr2 (256-345)||(32835918-32836007)
chr2 (127-325)||(40492309-40492507)
chr2 (255-354)||(13221829-13221928)
chr2 (259-348)||(14150302-14150391)
chr2 (128-170)||(32836093-32836135)
chr2 (108-173)||(14150477-14150542)
chr2 (256-347)||(11524066-11524157)
[»] chr4 (3 HSPs)
chr4 (255-362)||(11116163-11116270)
chr4 (274-362)||(50858465-50858553)
chr4 (258-298)||(45421596-45421636)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 1512043 - 1512391
Alignment:
Q  14 gagatgaatacggaaattttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattca 113  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||    
T  1512043 gagatgaatacaggaattttatcaaagctaaaacattgtggtcgattcccgtttgctcttcggatgtaggcgaagcattgggtctttaccatgctattca 1512142  T
Q  114 atgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagttt 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1512143 atgggtgcgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagttt 1512242  T
Q  214 ggagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |    
T  1512243 ggagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaattctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactc 1512342  T
Q  314 ttgctcgagaggtcattttcctagctagtccccatatttttgatgatgt 362  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1512343 ttgctcgagaggtcatttccctagctagtccccatatttttgatgatgt 1512391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 5477408 - 5477352
Alignment:
Q  255 ttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatac 311  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||    
T  5477408 ttttgaaaactctaaggtggagtttagtcggagacaagcgaatgaggtcactcatac 5477352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 12200464 - 12200397
Alignment:
Q  258 tgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagagg 325  Q
    |||||||| |||| ||||||||||| | ||||||||||||| |||||||||||| |||||| ||||||    
T  12200464 tgaaaactttaagatggagtttagttggagacaagcgaatgaggtcgctcatactcttgctagagagg 12200397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 5477555 - 5477478
Alignment:
Q  108 tattcaatgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaa 185  Q
    |||||||||||| | |||| ||||| |||| ||||||||||||||| || ||||  |||||||||| || | ||||||    
T  5477555 tattcaatgggtacaagaactacaattttcaaatgtagattttgagatgaatgcagagaaagttgtagactttttcaa 5477478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 12200562 - 12200489
Alignment:
Q  109 attcaatgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattattt 182  Q
    ||||||||||| |  ||| |||||||| | ||||||||||||||| ||||||| |||  |||||| ||||||||    
T  12200562 attcaatgggtacacgaactacaacttacaaatgtagattttgagatggatgcgaagttagttgtagattattt 12200489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 23051 - 22704
Alignment:
Q  15 agatgaatacggaaattttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattcaa 114  Q
    ||||||||||   |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||| |||    
T  23051 agatgaatacaagaattttatcaaagctaaaacattgtggtcgattcccgtttgctcttcggatgtaggcgaagcattgggtctttaccatgctatgcaa 22952  T
Q  115 tgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttg 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22951 tgggtgcgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagtttg 22852  T
Q  215 gagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||    
T  22851 gagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatactct 22752  T
Q  315 tgctcgagaggtcattttcctagctagtccccatatttttgatgatgt 362  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  22751 tgctcgagagaccatttccctagctagtccccatatttttgatgatgt 22704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 1539284 - 1538936
Alignment:
Q  14 gagatgaatacggaaattttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattca 113  Q
    |||||||||||   |||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||| ||||||||||||| ||||||    
T  1539284 gagatgaatacatgaattttatcaaagctaaaacattgtggtcgattcccgtttgctctttggatgtaggcgaagcattaggtctttaccatgctattca 1539185  T
Q  114 atgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagttt 213  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1539184 ataggtgcgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagttt 1539085  T
Q  214 ggagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |    
T  1539084 ggagatataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcggagacaagcgaatatggtcgctcatactc 1538985  T
Q  314 ttgctcgagaggtcattttcctagctagtccccatatttttgatgatgt 362  Q
    |||||| ||||| ||||| |||| ||||| ||||| |||||||||||||    
T  1538984 ttgctccagaggccatttccctaactagttcccatgtttttgatgatgt 1538936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 362
Target Start/End: Complemental strand, 22522875 - 22522542
Alignment:
Q  29 attttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattcaatgggtccgagaatt 128  Q
    |||||||||||||||| ||||||||  |||  |||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| || |||||    
T  22522875 attttatcaaagctaacacattgtgtccgaatcccgttttctcttcggatgtaggcaaagcattgggtctttacaatgctattcaatgggtgcgggaatt 22522776  T
Q  129 acaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataatggat 228  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||||| || |||||||| |||||||||    
T  22522775 acaactttcgaacatagattttgagttggacgccaagaaagttgtgtattatttcaataagggaaggaatgatatatccgaatttggagccataatggat 22522676  T
Q  229 gaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtca 328  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | ||    
T  22522675 gaatgtaggaagaattgcaatgatttttttgaaaactctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaagcca 22522576  T
Q  329 ttttcctagctagtccccatatttttgatgatgt 362  Q
     ||  ||||||||| ||| | |||||||| ||||    
T  22522575 cttctctagctagttcccgtgtttttgataatgt 22522542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 54332829 - 54332481
Alignment:
Q  14 gagatgaatacggaaattttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattca 113  Q
    |||||||| || | |||||||||||||||||||||||||||||||  |||| || ||||| ||||||||||||||||||| ||||| | |||| ||||||    
T  54332829 gagatgaacacaggaattttatcaaagctaaaacattgtggtcgaatcccgtttgctctttggatgtaggcgaagcattgagtcttcatcatgatattca 54332730  T
Q  114 atgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagttt 213  Q
    |||||| ||||||||||||||||| || |||||||||||||| ||  ||||||||||||||||||||||||||||||||   ||||||||||| ||||||    
T  54332729 atgggtgcgagaattacaactttcaaacgtagattttgagtttgacaccaagaaagttgtggattatttcaataagggcaataatgatatatcagagttt 54332630  T
Q  214 ggagctataatggatgaatgtaggaagaattgcaatga-ttgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacg 312  Q
    ||||| ||||||||| |||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||     
T  54332629 ggagccataatggataaatgtaggaagaattgcaatgattttttttcaaaactctaaggtggagtttagtcggagacaaacgaatgtggtcgctcatact 54332530  T
Q  313 cttgctcgagaggtcattttcctagctagtccccatatttttgatgatgt 362  Q
    ||||||||||||| || ||  ||||||||||||||| |||||||||||||    
T  54332529 cttgctcgagaggccacttctctagctagtccccat-tttttgatgatgt 54332481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 6033124 - 6032809
Alignment:
Q  14 gagatgaatacggaaattttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattca 113  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||  |||  || |||||||||||| |||||||||||  ||| |||||||| ||||||    
T  6033124 gagatgaacacgggaattt-atcaaagctaaaacattgtggtcgaatcccatttgctcttcggatgttggcgaagcattccgtccttaccatgctattca 6033026  T
Q  114 atgggtccgagaattacaactttcgaatgtagattttgagttggatgccaag-----aaagttgtggattatttcaataagggcgggaatgatatatcgg 208  Q
    |||||| |||||||||||| ||||||| |||||||| ||||||   | |||      |  |||||||| ||||||||| ||||  ||||||||||||| |    
T  6033025 atgggtgcgagaattacaattttcgaacgtagatttcgagttgttggacaactttcaactgttgtggaatatttcaatgagggaaggaatgatatatccg 6032926  T
Q  209 agtttggagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctca 308  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  6032925 agtttggagccataatggatgaatgtaggaagaattgcaatgattttcttaaaaactctaaggtggtgtttagtcggagacaagcgaatgtggtcgctca 6032826  T
Q  309 tacgcttgctcgagagg 325  Q
    ||| |||||||||||||    
T  6032825 tactcttgctcgagagg 6032809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 362
Target Start/End: Original strand, 19792108 - 19792387
Alignment:
Q  85 gaagcattgggtctttaccatgttattcaatgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttca 184  Q
    ||||| ||||| ||||  |||| ||| |||||||| |  ||| |||||||| | ||||| ||||| |||||||||||||||||||||||||||||||| |    
T  19792108 gaagccttgggactttctcatgctatacaatgggtgcaggaactacaacttcctaatgttgatttcgagttggatgccaagaaagttgtggattatttta 19792207  T
Q  185 ataagggcgggaatgatatatcggagtttggagctataatggatgaatgtaggaagaattgcaatgattgt--tttgaaaactctaaggtggagtttagt 282  Q
    |||  ||  | ||||| || || ||||||||||| ||  | |||||||||| ||  |  || | ||  |||  ||||||||||||||||||||||||| |    
T  19792208 atagaggaagaaatgacatttccgagtttggagcaattgttgatgaatgtaagagaagatgtagtgtgtgtattttgaaaactctaaggtggagtttaat 19792307  T
Q  283 cgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatatttttgatgatgt 362  Q
    || |||||||| |||||||| |||||||| |||||| |||||| || |||  |||||||||||||| | |||||||||||    
T  19792308 cggagacaagcaaatgtggttgctcatacacttgctagagaggccactttattagctagtccccatctctttgatgatgt 19792387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 44587405 - 44587745
Alignment:
Q  14 gagatgaatacggaaattttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattca 113  Q
    ||||||||||| | |||||||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||||||||||||| ||||||    
T  44587405 gagatgaatacaggaattttatcaaagctaaaacattgtggtcgaatcccgtttgctcttcggatgtaggcgaagcattgggtctttaccatgatattca 44587504  T
Q  114 atgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagttt 213  Q
    |||||| ||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  44587505 atgggtgcgagaattacaactttcaaacgtagattttgagatggacgccaagaaagttgtggattatttcaataagggcaggaatgatatatccgagttt 44587604  T
Q  214 ggagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgc 313  Q
    |||||  ||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |||||| | |    
T  44587605 ggagccgtaatggacgaatgtaggaagaattccattgattattttgaaaactctaaggtggagtttagtcggagacaatcgaatgtggttgctcatgctc 44587704  T
Q  314 ttgctcgagaggtcattttcctagctagtccccatattttt 354  Q
    |||||| ||| | || || ||||||||||| |||| |||||    
T  44587705 ttgctcaagaagccacttccctagctagtcaccatgttttt 44587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 139 - 350
Target Start/End: Original strand, 25938915 - 25939126
Alignment:
Q  139 aatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataatggatgaatgtagga 238  Q
    ||||| |||||||| |||||||||||||||||||| |||||||| ||||  ||    ||||||||| | ||||||||||| ||| |||| || ||||| |    
T  25938915 aatgtggattttgaattggatgccaagaaagttgtagattattttaatagaggaaacaatgatataaccgagtttggagcaatagtggaggagtgtag-a 25939013  T
Q  239 agaa-ttgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctag 337  Q
    |||| ||| |||  ||  ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||  | |||||||||| || |||| |||    
T  25939014 agaagttgtaatctttactttgaaaactctaaggtagagtttagtcggagacaagcgaatgaggtcgctcacactttagctcgagaggccactttcttag 25939113  T
Q  338 ctagtccccatat 350  Q
    ||| |||||||||    
T  25939114 ctaatccccatat 25939126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 362
Target Start/End: Complemental strand, 896941 - 896730
Alignment:
Q  151 gagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataatggatgaatgtaggaagaattgcaatg 250  Q
    |||||||||||||||||||||||||||||||| |||   ||  | ||||| || || ||||||||||| ||  | |||||||||| ||  |  || | ||    
T  896941 gagttggatgccaagaaagttgtggattattttaattgaggaagaaatgacatttccgagtttggagcgattgttgatgaatgtaagagaagatgtagtg 896842  T
Q  251 attgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatat 350  Q
      | |||||||||||||||||| |||||||  || ||||| || || ||||| ||| |||| |||||| |||| |||| |||  |||||||||| ||| |    
T  896841 tgtattttgaaaactctaaggtagagtttaaacggagacaggcaaacgtggttgctaatacacttgctagagaagtcactttattagctagtcctcatct 896742  T
Q  351 ttttgatgatgt 362  Q
     |||||||||||    
T  896741 ctttgatgatgt 896730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 362
Target Start/End: Original strand, 40796448 - 40796648
Alignment:
Q  162 caagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataatggatgaatgtaggaagaattgcaatgattgttttgaa 261  Q
    ||||||||||||||||||||||||||  ||  | ||||| || || ||||||||||  ||  | |||||||||| ||  |  || | ||  | |||||||    
T  40796448 caagaaagttgtggattatttcaatagaggaagaaatgacatttccgagtttggagtaattgttgatgaatgtaagagaagatgtagtgtgtattttgaa 40796547  T
Q  262 aactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatatttttgatgatg 361  Q
    |||| ||||||| |||||| ||| | |||||| |||||||| |||||||| |||||| |||| | || |||  ||||||||||| || | ||||||||||    
T  40796548 aactttaaggtgaagtttaatcggaaacaagcaaatgtggttgctcatacacttgctagagatgccactttattagctagtccctatctctttgatgatg 40796647  T
Q  362 t 362  Q
    |    
T  40796648 t 40796648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 30273747 - 30273684
Alignment:
Q  260 aaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgaga 323  Q
    ||||| ||||||||||||||||||| |||||||||||||  ||||||||||| |||||| ||||    
T  30273747 aaaacactaaggtggagtttagtcggagacaagcgaatgaagtcgctcatactcttgctagaga 30273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 7176112 - 7176205
Alignment:
Q  255 ttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccat 348  Q
    ||||||||| |||||||| |||||| || | |||||||||||||  ||||||||||   | ||||||||||  |  ||| ||||||||||||||    
T  7176112 ttttgaaaattctaaggttgagttttgtaggagacaagcgaatgaagtcgctcataatttagctcgagaggctacattcttagctagtccccat 7176205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 2276186 - 2276018
Alignment:
Q  14 gagatgaatacggaaattttatcaaagctaaaacattgtggtcgatacccggtttctcttcggatgtaggcgaagcattgggtctttaccatgttattca 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||||| || || ||||||||||||| ||||||||||||||||||||| ||||||    
T  2276186 gagatgaatacgggaattttatcaaagctaaaacattgtggtccaaacccgtttgctattcggatgtaggcaaagcattgggtctttaccatgctattca 2276087  T
Q  114 atgggtccgagaattacaact--ttcgaatgtagattttgagttggatgccaagaaagttgtggattat 180  Q
    |||||| ||||| |||  |||  |||||||||||||||||  |||||||||||||||||||||||||||    
T  2276086 atgggtgcgagatttaacacttcttcgaatgtagattttggtttggatgccaagaaagttgtggattat 2276018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 207 - 324
Target Start/End: Complemental strand, 2274954 - 2274837
Alignment:
Q  207 ggagtttggagctataatggatgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgct 306  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||    
T  2274954 ggagtttagagctataagggatgagtgtaggaagaattgcaatgattattttgaaaactttaaggtgaagtttagtcggagacaagcgaatgtggtcgct 2274855  T
Q  307 catacgcttgctcgagag 324  Q
    ||||  ||||||||||||    
T  2274854 catattcttgctcgagag 2274837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 362
Target Start/End: Complemental strand, 27804769 - 27804666
Alignment:
Q  259 gaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatatttttgatg 358  Q
    |||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |||||| |||||| ||| |||  |||| |||||||| | ||| |||    
T  27804769 gaaaactctaaggtggagttcagtcggaaacaagcgaatgaggtcgctcatactcttgctagagaggccatattctcagctggtccccatgtctttaatg 27804670  T
Q  359 atgt 362  Q
    ||||    
T  27804669 atgt 27804666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 27804920 - 27804855
Alignment:
Q  108 tattcaatgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgt 173  Q
    |||||||||||| | |||| |||||||| | ||||||||||||||| ||||||| |||||||||||    
T  27804920 tattcaatgggtacaagaactacaacttacaaatgtagattttgagatggatgcaaagaaagttgt 27804855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 20463646 - 20463550
Alignment:
Q  256 tttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatattttt 354  Q
    ||||||||||||||||| ||||||| | | |||||||||| | ||||||||||||  |||| |  ||||| |||  |||||||||||||||| ||||||    
T  20463646 tttgaaaactctaaggttgagtttaataggagacaagcgagtatggtcgctcatattcttggt--agaggccataatcctagctagtccccaaattttt 20463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 10037735 - 10037784
Alignment:
Q  261 aaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcata 310  Q
    |||||||| |||||||||||||||| ||||||| | | ||||||||||||    
T  10037735 aaactctagggtggagtttagtcgacgacaagcaattatggtcgctcata 10037784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 362
Target Start/End: Complemental strand, 14489543 - 14489290
Alignment:
Q  109 attcaatgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcgg 208  Q
    ||||||||||| |  ||| |||||||| | ||||||||||||||| ||||||| |||  |||||| |||||||| || || ||| | ||  || | || |    
T  14489543 attcaatgggtacacgaactacaacttacaaatgtagattttgagatggatgcgaagttagttgtagattattttaacaaaggcagcaacaatgtttctg 14489444  T
Q  209 agtttggagctataatggatgaatgtaggaagaatt-gcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctc 307  Q
    | |||||||| ||| |||| ||||| |  ||||    |||||| || ||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  14489443 aatttggagcaatattggaggaatgcaa-aagatgccgcaatgtttatttcgaaaactctaaggtgaagtttagtcggagacaagcgaatgaggtcgctc 14489345  T
Q  308 atacgcttgctcgagaggtcattttcctagctagtccccatatttttgatgatgt 362  Q
    |||| |||||| ||||||   | ||| |||||||||||||  ||||| |||||||    
T  14489344 atactcttgctagagaggctttattcttagctagtccccaagtttttaatgatgt 14489290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 27039865 - 27039787
Alignment:
Q  245 gcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagagg 325  Q
    |||||| || ||| ||||||||||||||||||||||   | |||| |||||||| |||||||||||| |||||| ||||||    
T  27039865 gcaatgtttatttcgaaaactctaaggtggagtttaa--ggagacgagcgaatgaggtcgctcatactcttgctagagagg 27039787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 34673768 - 34673864
Alignment:
Q  251 attgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtcccca 347  Q
    |||| ||||||||||||||||| ||||||| | | | |||||||||| |||||  |||||| |||||  |||||  |||  ||||||||||||||||    
T  34673768 attggtttgaaaactctaaggttgagtttaataggaaacaagcgaatatggtcattcatactcttgcaagagagaccatactcctagctagtcccca 34673864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 343
Target Start/End: Complemental strand, 3158614 - 3158400
Alignment:
Q  128 tacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataatgga 227  Q
    |||||||| | |||||  ||||| |||||||||| ||||| || || |||||||| ||||   | || ||||||||||| ||||||||||| ||| ||||    
T  3158614 tacaacttacaaatgtgaattttaagttggatgcgaagaaggt-gtagattattttaatagaagtggtaatgatatatctgagtttggagcaatagtgga 3158516  T
Q  228 tgaatgtaggaagaattgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtc 327  Q
     || |||  ||  | ||| |||  || |||||||||||||||||| ||||||||||| |||||||||| ||  ||| ||||||| ||||||||||||| |    
T  3158515 ggagtgtcagagaagttgtaatctttattttgaaaactctaaggtagagtttagtcggagacaagcgagtgaagtcactcatactcttgctcgagaggcc 3158416  T
Q  328 attttcctagctagtc 343  Q
    | |||| ||| |||||    
T  3158415 actttcttagttagtc 3158400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 362
Target Start/End: Original strand, 19477368 - 19477471
Alignment:
Q  259 gaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatatttttgatg 358  Q
    |||||||| | ||| ||||||||||| ||||||||||||| ||||||||| || ||||| ||||||| || |||| ||||||||||||||| |||| |||    
T  19477368 gaaaactccatggtagagtttagtcggagacaagcgaatgaggtcgctcacactcttgcacgagaggccactttcttagctagtccccatacttttaatg 19477467  T
Q  359 atgt 362  Q
    ||||    
T  19477468 atgt 19477471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 46149378 - 46149305
Alignment:
Q  255 ttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtca 328  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||| || ||||||||||| ||||    
T  46149378 ttttgaaaactctaaggtggagtttagttgaaaacaagggaatgtggtcgttcagactcttgctcgagatgtca 46149305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 297
Target Start/End: Original strand, 12928525 - 12928683
Alignment:
Q  139 aatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataatggatgaatgtagga 238  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| ||||  ||    ||||||||| | || |||||||| ||| || | || |||| ||    
T  12928525 aatgtggattttgaattggatgccaagaaagttgtggattattttaatagaggaaacaatgatataaccgaatttggagcaatagtgaaggagtgta-ga 12928623  T
Q  239 agaa-ttgcaatgattgttttgaaaactctaaggtggagtttagtcgaagacaagcgaat 297  Q
    |||| ||| |||  ||  ||||||||||||||||| ||||||||||| | ||||||||||    
T  12928624 agaagttgtaatctttactttgaaaactctaaggtagagtttagtcggaaacaagcgaat 12928683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 3215058 - 3215117
Alignment:
Q  259 gaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgct 318  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||||||||||| ||||||    
T  3215058 gaaaactctaaggtggagttcagtaggagacaagcgaatgaggtcgctcatactcttgct 3215117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 350
Target Start/End: Complemental strand, 30092040 - 30091945
Alignment:
Q  255 ttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatat 350  Q
    |||||||||| ||||||| ||||||||||| |||||| |||| | ||||||||| || || |||||||||| || |||| || |||||| ||||||    
T  30092040 ttttgaaaacactaaggtagagtttagtcggagacaatcgaaggaggtcgctcacactctagctcgagaggacactttcttaactagtctccatat 30091945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 3214922 - 3214972
Alignment:
Q  123 agaattacaactttcgaatgtagattttgagttggatgccaagaaagttgt 173  Q
    |||| |||||||| | ||||||||||||||| ||||||| |||||||||||    
T  3214922 agaactacaacttccaaatgtagattttgagatggatgcaaagaaagttgt 3214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 19477248 - 19477333
Alignment:
Q  139 aatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataat 224  Q
    ||||| |||||||| |||||||||||||  ||||| |||||||| |||   ||  | ||||||||||| ||||||||||| |||||    
T  19477248 aatgttgattttgaattggatgccaagacggttgtagattattttaattgaggttgcaatgatatatccgagtttggagcaataat 19477333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 32836007 - 32835918
Alignment:
Q  256 tttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccc 345  Q
    ||||||||||||||||| ||||||||||| |||||| |||||| ||| |||||||  ||||| ||||||| || ||||||||||||||||    
T  32836007 tttgaaaactctaaggttgagtttagtcggagacaaacgaatgaggtagctcataatcttgcacgagaggccactttcctagctagtccc 32835918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 325
Target Start/End: Original strand, 40492309 - 40492507
Alignment:
Q  127 ttacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatcggagtttggagctataatgg 226  Q
    ||||||||| | ||||| ||||||||||||||||| ||||||||||| |||||||| || || ||    ||||| || || ||||||||||| ||| | |    
T  40492309 ttacaacttacaaatgtggattttgagttggatgcaaagaaagttgtagattattttaacaaaggtcataatgacatttctgagtttggagcaatagttg 40492408  T
Q  227 atgaatgtaggaagaattgcaatgattgttttgaaaactct-aaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagagg 325  Q
    | |||||| |||  |||||   |  || ||||| ||||||| ||||| ||||||||||| ||||||||||||| ||||||||| ||  ||||||||||||    
T  40492409 aggaatgtcggagaaattg-tctacttattttgtaaactctaaaggtagagtttagtcggagacaagcgaatgaggtcgctcacacatttgctcgagagg 40492507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 13221829 - 13221928
Alignment:
Q  255 ttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatattttt 354  Q
    |||||||||||||||||| ||||||||||  |||||||| | || ||| |||||||| |||||| || | |||| |||| || |||||||||| ||||||    
T  13221829 ttttgaaaactctaaggtagagtttagtcagagacaagcaactgaggttgctcatacacttgctagaaatgtcactttcttaactagtccccaaattttt 13221928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 14150391 - 14150302
Alignment:
Q  259 gaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccat 348  Q
    |||||||||||||  ||||| ||||| ||||||||||||| |||||||||||| ||||||  ||||| ||| |||  |||| ||||||||    
T  14150391 gaaaactctaaggatgagttcagtcggagacaagcgaatgaggtcgctcatactcttgctaaagaggccatattctcagctggtccccat 14150302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 32836135 - 32836093
Alignment:
Q  128 tacaactttcgaatgtagattttgagttggatgccaagaaagt 170  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  32836135 tacaactttcaaatgttgattttgagttggatgccaagaaagt 32836093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 14150542 - 14150477
Alignment:
Q  108 tattcaatgggtccgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgt 173  Q
    |||||||||||| |  ||| |||||||| | ||||||||||||||| ||||||| |||||||||||    
T  14150542 tattcaatgggtacaggaactacaacttacaaatgtagattttgagatggatgcaaagaaagttgt 14150477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 11524157 - 11524066
Alignment:
Q  256 tttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtcccca 347  Q
    ||||||||||||||| | ||||||| | | |||||||||||| | |||||||||||  ||||| |||||| |||  ||||| ||||| ||||    
T  11524157 tttgaaaactctaagattgagtttaataggagacaagcgaatatagtcgctcatactattgctagagaggccatactcctaactagttccca 11524066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 11116163 - 11116270
Alignment:
Q  255 ttttgaaaactctaaggtggagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatattttt 354  Q
    ||||| |||||||||||| ||||||||||| ||||||||||| | ||||||||| || ||||| | ||||| ||  | | ||||||||||||||| ||||    
T  11116163 ttttgcaaactctaaggtagagtttagtcggagacaagcgaacgaggtcgctcacactcttgcacaagaggccacgtccttagctagtccccataatttt 11116262  T
Q  355 gatgatgt 362  Q
     |||||||    
T  11116263 aatgatgt 11116270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 50858465 - 50858553
Alignment:
Q  274 gagtttagtcgaagacaagcgaatgtggtcgctcatacgcttgctcgagaggtcattttcctagctagtccccatatttttgatgatgt 362  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||||||||||| | | | | |||||||||||||| | |||||| ||||    
T  50858465 gagtttagtcggagacaagcgaacgaggtcgctcatactcttgctcgagaggccttgtccttagctagtccccatgtgtttgataatgt 50858553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 45421596 - 45421636
Alignment:
Q  258 tgaaaactctaaggtggagtttagtcgaagacaagcgaatg 298  Q
    |||||||||||  |||||||||| |||||||||||||||||    
T  45421596 tgaaaactctagtgtggagtttattcgaagacaagcgaatg 45421636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University