View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_high_17 (Length: 347)
Name: NF15931_high_17
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 51846712 - 51847034
Alignment:
| Q |
17 |
acaatgaagtattcatgaatgatcctctcaaagcttagcggtgaacaatgagttttgcacaacactacatatattaaagggcatctatagaggaagnnnn |
116 |
Q |
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| T |
51846712 |
acaatgaagtattcatgaatgatcctctcaaagcttagcggtgaacaatgagttttgcacaacactacatatattaaagggcatctatagaggaagaaaa |
51846811 |
T |
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| Q |
117 |
nnnggtcacttacatagggagaaaaattggatgcatgcatggctttatggaactactcgaacttctataaaccaaaaaccaaaagatgctgaagattgga |
216 |
Q |
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| T |
51846812 |
aaaggtcacttacatagggagaaaaattggatgcatgcatggctttatggaactgctcgaacttctataaaccaaaaaccaaaagatgctgaagattgga |
51846911 |
T |
|
| Q |
217 |
gtgttttccatgttttggctccttttttgagttgaaaaatgtgaaagtacaagatcaattgaatggtgtgcctcttgtgctgtttatggcccttgtaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51846912 |
gtgttttccatgttttggctccttttttgagttgaaaaatgtgaaagtacaagatcaattgaatggcgtgcctcttgtgctgtttatggcccttgtaaat |
51847011 |
T |
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| Q |
317 |
taatgtgcaattcatagtataat |
339 |
Q |
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|||||||||||||||| |||||| |
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| T |
51847012 |
taatgtgcaattcataatataat |
51847034 |
T |
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