View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_high_19 (Length: 342)
Name: NF15931_high_19
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_high_19 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 2606 - 2274
Alignment:
| Q |
1 |
catggaatgtgagaaattttaggctactctttccctccattgcttttgcaacttgtttccagtaaaggacacttcatgatggtcaatacagaaagagaag |
100 |
Q |
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| T |
2606 |
catggaatgtgagaaattttaggccactctttccctccattgcttttgcaacttgcttccagtaaaggacacttcttgatggtcaatacagaaagagaag |
2507 |
T |
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| Q |
101 |
aaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccaatttccatccaagca |
200 |
Q |
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| T |
2506 |
aaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccactttccatccaagca |
2407 |
T |
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| Q |
201 |
ttttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataaatgcattcaaaagatcatcacctcca |
300 |
Q |
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| T |
2406 |
ttttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataagtgcattcaaaagatcatcacctcca |
2307 |
T |
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| Q |
301 |
atgtgcaatgttgtaagaaaagtgagcctttgc |
333 |
Q |
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| T |
2306 |
atgcgcaatgttgtaagaaaagtgagcctttgc |
2274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 17624 - 17732
Alignment:
| Q |
77 |
tgatggtcaatacagaaagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatg |
176 |
Q |
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| T |
17624 |
tgatagtcagtaccgaaagagaggaaggcagtccctcttccggtaaggattcaagccggcgacaatctgaaatctcaaggttttcaagagacgtgagatg |
17723 |
T |
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| Q |
177 |
ctgcagcca |
185 |
Q |
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| T |
17724 |
ctgaagcca |
17732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 3888263 - 3887931
Alignment:
| Q |
1 |
catggaatgtgagaaattttaggctactctttccctccattgcttttgcaacttgtttccagtaaaggacacttcatgatggtcaatacagaaagagaag |
100 |
Q |
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| T |
3888263 |
catggaatgtgagaaattttaggccactctttccctccattgcttttgcaacttgcttccagtaaaggacacttcttgatggtcaatacagaaagagaag |
3888164 |
T |
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| Q |
101 |
aaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccaatttccatccaagca |
200 |
Q |
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| T |
3888163 |
aaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccactttccatccaagca |
3888064 |
T |
|
| Q |
201 |
ttttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataaatgcattcaaaagatcatcacctcca |
300 |
Q |
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| T |
3888063 |
ttttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataagtgcattcaaaagatcatcacctcca |
3887964 |
T |
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| Q |
301 |
atgtgcaatgttgtaagaaaagtgagcctttgc |
333 |
Q |
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| T |
3887963 |
atgcgcaatgttgtaagaaaagtgagcctttgc |
3887931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 3910716 - 3910900
Alignment:
| Q |
1 |
catggaatgtgagaaattttaggctactctttccctccattgcttttgcaacttgtttccagtaaaggacacttcatgatggtcaatacagaaagagaag |
100 |
Q |
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| T |
3910716 |
catggaatatgtgaaatcttaggccactctttgcctccattgctctgacagtttgcttgcagtaaaaggcatcgcttgatagtcagtaccgaaagagagg |
3910815 |
T |
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| Q |
101 |
aaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagcca |
185 |
Q |
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| T |
3910816 |
aaggcagtccctcttccggtaaggattcaagccggcgacaatctgaaatctcaaggttttcaagagacgtgagatgctgaagcca |
3910900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 3907388 - 3907350
Alignment:
| Q |
147 |
aatctcaaggttttcaagagatgtgagatgctgcagcca |
185 |
Q |
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| T |
3907388 |
aatctcaaggttttcaagagacgtgagatgctgaagcca |
3907350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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