View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_high_20 (Length: 335)
Name: NF15931_high_20
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 84 - 316
Target Start/End: Original strand, 53233033 - 53233262
Alignment:
| Q |
84 |
ggaactttgagttagtacagtgtcagtcagcaacagctatctctcatgaactattatgactgtaaataaagactagtccttctcttcttctgattctatt |
183 |
Q |
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| T |
53233033 |
ggaactttgagttagtacagtgtcagtcagcaacagctatctctcatgaactattatgactgtaaataaagactagtccttctcttcttctgattctatt |
53233132 |
T |
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| Q |
184 |
gcgttgcatgctaagactaataacaccatcactacatcactgtccttccttcaacactttcatcatcatcattcattattattattatatgcacagattc |
283 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53233133 |
gcgttgcatgctaagactaacaacaccatcactacatcactgtccttccttgaacactttcatcatcatcattc---attattattatatgcacagattc |
53233229 |
T |
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| Q |
284 |
tcatttctctagctccaccacctgatgcatgag |
316 |
Q |
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| T |
53233230 |
tcatttctctagctccaccacctgatgcatgag |
53233262 |
T |
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