View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15931_high_4 (Length: 507)

Name: NF15931_high_4
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15931_high_4
NF15931_high_4
[»] chr4 (3 HSPs)
chr4 (150-501)||(52115525-52115876)
chr4 (17-61)||(52115393-52115437)
chr4 (278-378)||(1518421-1518520)
[»] chr2 (7 HSPs)
chr2 (277-373)||(43966880-43966975)
chr2 (277-372)||(40987463-40987558)
chr2 (285-370)||(23396220-23396305)
chr2 (280-374)||(27935176-27935271)
chr2 (182-229)||(43966994-43967041)
chr2 (187-239)||(23396322-23396374)
chr2 (184-262)||(40987544-40987621)
[»] chr3 (2 HSPs)
chr3 (188-254)||(29437000-29437066)
chr3 (280-372)||(33630529-33630621)
[»] chr5 (5 HSPs)
chr5 (177-240)||(16884419-16884482)
chr5 (184-219)||(12609768-12609803)
chr5 (288-371)||(16884505-16884588)
chr5 (186-262)||(3236208-3236284)
chr5 (281-329)||(12610015-12610063)
[»] chr7 (2 HSPs)
chr7 (332-362)||(48363836-48363866)
chr7 (181-229)||(48363942-48363990)
[»] chr6 (2 HSPs)
chr6 (187-229)||(3727563-3727605)
chr6 (278-324)||(33815251-33815297)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 150 - 501
Target Start/End: Original strand, 52115525 - 52115876
Alignment:
Q  150 tttcattcattttgtttgattgtttgctaataggacaatacaatgcttatataggttgatgcatacacatgataagataactatatcaacctcacggtaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||  |||    
T  52115525 tttcattcattttgtttgattgtttgctaataggacaatacaatgtttatataagttgatgcatacacatgataagataactatatcaacttcacaataa 52115624  T
Q  250 caataatatcaaataattagtcaataaaacaatactaccaaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcatta 349  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52115625 caataatatcaaataattagtca-taaaacaatactatcaaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcatta 52115723  T
Q  350 ttttagtctccatgatcctatcaatt-aagtggtaaaaactaaaatatgggagggtttggccaactagtatcttaggacacgaattaacattttatttat 448  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52115724 ttttagtctccatgatcctatcaattcaagtggtaaaaactaaaatatgggagggtttggccaactagtatcttaggacacgaattaacattttatttat 52115823  T
Q  449 tttcaattaaacagtcaaatccttctttctcctatagatattgcttcttttca 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52115824 tttcaattaaacagtcaaatccttctttctcctatagatattgcttcttttca 52115876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 52115393 - 52115437
Alignment:
Q  17 atgttttaatttgattcatgatagaaaactaaaacctatcactaa 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52115393 atgttttaatttgattcatgatagaaaactaaaacctatcactaa 52115437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 1518421 - 1518520
Alignment:
Q  278 acaatactaccaaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcattattttagtctccatgatcctatcaattaa 377  Q
    |||||||||||||||||||||||||||| || ||| | || ||| |||||||  |||||||||  ||||||||||| |  ||||||||||||||| ||||    
T  1518421 acaatactaccaaacaaactaatagaatatgcttatagga-ctctttctagaataaactagaatgttcattatttttgcttccatgatcctatcatttaa 1518519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 373
Target Start/End: Complemental strand, 43966975 - 43966880
Alignment:
Q  277 aacaatactaccaaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcattattttagtctccatgatcctatcaa 373  Q
    ||||||||||| ||||||||||||| ||| || |||||||||| ||||||| |  |||||||||||||||||||||| |||| ||||||||||||||    
T  43966975 aacaatactac-aaacaaactaatataatatgcttaaaagatccccttctaaaataaactagaagattcattattttggtcttcatgatcctatcaa 43966880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 40987558 - 40987463
Alignment:
Q  277 aacaatactaccaaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcattattttagtctccatgatcctatca 372  Q
    |||||||||| |||||||||||||||||| || ||||||||||  ||||||||  ||||||||||| ||||| ||||||   ||||||||||||||    
T  40987558 aacaatactatcaaacaaactaatagaatatgcttaaaagatccacttctagaataaactagaagaatcattgttttagcacccatgatcctatca 40987463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 23396305 - 23396220
Alignment:
Q  285 taccaaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcattattttagtctccatgatcctat 370  Q
    ||||||||||| || |||||| || ||||||||||  ||||||||  |||||||||||||||||||| ||  ||||||||||||||    
T  23396305 taccaaacaaattagtagaatatgcttaaaagatcctcttctagaataaactagaagattcattattctaacctccatgatcctat 23396220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 27935271 - 27935176
Alignment:
Q  280 aatactaccaaacaaactaatagaatgtggttaaaagatctc-cttctagagcaaactagaagattcattattttagtctccatgatcctatcaat 374  Q
    |||||||||||||||| ||||| ||| || |||||||||| | ||||||||  |||||| ||||||| ||||| ||| ||| |||||| |||||||    
T  27935271 aatactaccaaacaaattaatataatatgtttaaaagatcactcttctagaataaactaaaagattcgttattctagcctcaatgatcgtatcaat 27935176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 43967041 - 43966994
Alignment:
Q  182 ggacaatacaatgcttatataggttgatgcatacacatgataagataa 229  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  43967041 ggacaatacaatgcttatataggtcaatgcatacacatgataacataa 43966994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 23396374 - 23396322
Alignment:
Q  187 atacaatgcttatataggttgatgcatacacatgataagataactatatcaac 239  Q
    ||||||||| |||||| ||||||||| ||||||||||||||| ||| ||||||    
T  23396374 atacaatgcatatataagttgatgcaaacacatgataagatagctacatcaac 23396322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 40987621 - 40987544
Alignment:
Q  184 acaatacaatgcttatataggttgatgcatacacatgataagataactatatcaacctcacggtaacaataatatcaaa 262  Q
    |||||||||| |||||||||||  ||||||||||||  |||||||| || ||||||| |||  |||||||| |||||||    
T  40987621 acaatacaatacttatataggta-atgcatacacattgtaagataagtacatcaaccacacaataacaatactatcaaa 40987544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 29437066 - 29437000
Alignment:
Q  188 tacaatgcttatataggttgatgcatacacatgataagataactatatcaacctcacggtaacaata 254  Q
    ||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||| ||||||||    
T  29437066 tacaatgcttatataggttgatgcatacacatggtaagataaatacatcaaccacacgataacaata 29437000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 33630621 - 33630529
Alignment:
Q  280 aatactaccaaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcattattttagtctccatgatcctatca 372  Q
    |||||||| |||||||| ||| |||| |  |||||||||| |||||||||  |||||||||||||||||||| |||  | |||||||||||||    
T  33630621 aatactactaaacaaacaaatggaatatacttaaaagatccccttctagaataaactagaagattcattattctagcgttcatgatcctatca 33630529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 16884419 - 16884482
Alignment:
Q  177 taataggacaatacaatgcttatataggttgatgcatacacatgataagataactatatcaacc 240  Q
    |||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| || |||||||    
T  16884419 taatgggataatacaatgcttataaaggttgatgcatatacatgataagataaatacatcaacc 16884482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 12609803 - 12609768
Alignment:
Q  184 acaatacaatgcttatataggttgatgcatacacat 219  Q
    ||||||||||||||||||||||||||||||||||||    
T  12609803 acaatacaatgcttatataggttgatgcatacacat 12609768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 16884505 - 16884588
Alignment:
Q  288 caaacaaactaatagaatgtggttaaaagatctccttctagagcaaactagaagattcattattttagtctccatgatcctatc 371  Q
    ||||| || ||||||||| || ||||||||| ||||||||||  |||||||| ||||||||||| |||  ||||||||| ||||    
T  16884505 caaactaattaatagaatatgcttaaaagatttccttctagaataaactagatgattcattattctagcttccatgatcatatc 16884588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 3236284 - 3236208
Alignment:
Q  186 aatacaatgcttatataggttgatgcatacacatgataagataactatatcaacctcacggtaacaataatatcaaa 262  Q
    |||||||| | |||||||||| ||||||||||||  |||||||| || ||||||  |||  |||||||| |||||||    
T  3236284 aatacaatacatatataggttaatgcatacacatagtaagataagtacatcaactacacaataacaatactatcaaa 3236208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 12610015 - 12610063
Alignment:
Q  281 atactaccaaacaaactaatagaatgtggttaaaagatctccttctaga 329  Q
    |||||| |||||||||||||||||  || |||||||||||| |||||||    
T  12610015 atactatcaaacaaactaatagaacatgtttaaaagatctctttctaga 12610063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 362
Target Start/End: Complemental strand, 48363866 - 48363836
Alignment:
Q  332 aaactagaagattcattattttagtctccat 362  Q
    |||||||||||||||||||||||||||||||    
T  48363866 aaactagaagattcattattttagtctccat 48363836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 48363990 - 48363942
Alignment:
Q  181 aggacaatacaatgcttatataggttgatgcatacacatgataagataa 229  Q
    |||| ||||||||| |||||||||||||| ||| |||||| ||||||||    
T  48363990 aggataatacaatgtttatataggttgatacatgcacatggtaagataa 48363942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 3727605 - 3727563
Alignment:
Q  187 atacaatgcttatataggttgatgcatacacatgataagataa 229  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||    
T  3727605 atacaatgcttatataagttgatgcacacacatggtaagataa 3727563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 33815297 - 33815251
Alignment:
Q  278 acaatactaccaaacaaactaatagaatgtggttaaaagatctcctt 324  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||    
T  33815297 acaatactaccaaacaaactaatataatatgcttaaaagatcccctt 33815251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University