View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_high_9 (Length: 415)
Name: NF15931_high_9
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 39922718 - 39923104
Alignment:
| Q |
18 |
atgatcaaacattaaattaaatgatcaagggtccaagttaataccatttttgctagagtatgttgattataagttcatagata--tccttaaaacaaaaa |
115 |
Q |
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| T |
39922718 |
atgatcaaacattaaattaaatgatcaagggtccaagttaataccatttatgctagagtatgttgattataagttcatagatacatccttaaaacaaaaa |
39922817 |
T |
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| Q |
116 |
gtccatagatacataatcctttcttggtgatgtgatatagtatgggtttgatttagttttgcggacttatacgtatgttcatgtttagaatgccattttg |
215 |
Q |
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| T |
39922818 |
gtccatagatacataatgctttcttggtgatgtgatatagtatgggtttgatttagttttgcggagttatacgtatgt------ttagaatgccattttg |
39922911 |
T |
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| Q |
216 |
ctgtgaatttgtaaagttaaaaatctcaacttctagtacatgtgcgtctgcgtcattcctgccgaggaaacaaacggtccaatagtttatttctttgcac |
315 |
Q |
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| T |
39922912 |
ctgtgaatttgtaaagttaaaaatctcaacttctagtacatgtgcgtctgcgtcattcctgccgaggaaacaaacggtccaatagtttatttctttgcac |
39923011 |
T |
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| Q |
316 |
ataaggtagaaaaccttgcgtaattatatgcaatattacatcaacatatttgttgatagcaatttacatctacactaatcttttttcttctca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39923012 |
ataaggtagaaaaccttgcgtaattatatgcaatattacatcaacatttttgttgatagcaatttacatctacactaatcttttttcttctca |
39923104 |
T |
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