View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15931_low_18 (Length: 342)
Name: NF15931_low_18
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 22830897 - 22830581
Alignment:
| Q |
11 |
caaaggagtgaaacaaaaaattaatatgcagattttcaatcaactccaaaatattattttttatggtataattaaactcatttattggcttaagactgtt |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22830897 |
caaagaagtgaaacaaaaaattaatatgcagattttcaatcaactccaaaatattattttttatggtataattaaactcatttattggcttaagactgtt |
22830798 |
T |
|
| Q |
111 |
gcatcagctagcatgtctaactttgttattatgaagaagtttaatgtcactcttcatcccccaagggctcctagaattattgaagtgatatcgtaacctc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
22830797 |
gcatcagctagcatgtctaactttgttattatgaagaagtttaatgtcactcttcatcccccaagcgctcctagaattattgaagtgatatggtaacctc |
22830698 |
T |
|
| Q |
211 |
ctccccatggatggatcaaatgcaacactgatggatccacaaatggcaacctctccttttgtggaggaatttttagagacagcaaggcttaattctctta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
22830697 |
ctccccatggatggatcaaatgcaacaccgatggatccacaaatggcaacctctccttttgtggaggaatttttagagatagcaaggtttaattctctta |
22830598 |
T |
|
| Q |
311 |
tgctttggggaaaatac |
327 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22830597 |
tgctttggggaaaatac |
22830581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 15255089 - 15255143
Alignment:
| Q |
142 |
tgaagaagtttaatgtcactcttcatcccccaagggctcctagaattattgaagt |
196 |
Q |
| |
|
|||||||||||||||| || |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
15255089 |
tgaagaagtttaatgtttctattcaccccccaaaggctcctagaattattgaagt |
15255143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 35085828 - 35085919
Alignment:
| Q |
11 |
caaaggagtgaaacaaaaaattaatatgcagattttcaatcaactccaaaatattattttttatggtataattaaactcatttattggctta |
102 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
35085828 |
caaagaagtgaaacaagaaattaatatgcagagtttcaatcaactccaaaatattattttttatggtatgattaaactcattaattggctta |
35085919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 10030576 - 10030667
Alignment:
| Q |
11 |
caaaggagtgaaacaaaaaattaatatgcagattttcaatcaactccaaaatattattttttatggtataattaaactcatttattggctta |
102 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
10030576 |
caaagaagtgaaacaagaaattaatatgcagattttcaatcaactccaaaatattattttttatggtaggattaaactcatgtattggctta |
10030667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 4896230 - 4896138
Alignment:
| Q |
11 |
caaaggagtgaaacaaaaaattaatatgcagattttcaatcaactccaaaatattatt-ttttatggtataattaaactcatttattggctta |
102 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
4896230 |
caaagaagtgaaacaagaaattaatatgcagagtttcaatcaacaccaaaatattatttttttatggtatgattaaactcattaatttgctta |
4896138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 290
Target Start/End: Complemental strand, 25929409 - 25929236
Alignment:
| Q |
118 |
ctagcatgtctaactttgttattatgaagaagtttaatgtcactcttcatcccccaagggctcctagaattattgaagtgatatcgtaacct--cctccc |
215 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||| ||||| ||||| |||||||||||| | |||| ||| |||||||| || | | ||||| |||| | |
|
|
| T |
25929409 |
ctagcatatctaattttgttattttgaagaagttcaatgttactctacatcccccaaggccccctaaaataattgaagttatttggcaacctcccctcac |
25929310 |
T |
|
| Q |
216 |
catggatggatcaaatgcaacactgatggatccacaaatggcaacctctccttttgtggaggaatttttagagac |
290 |
Q |
| |
|
|| |||||| || | |||||||||||| ||||||||||| ||| | || | |||||||||||||||||||||| |
|
|
| T |
25929309 |
ca-agatggactaagtacaacactgatgggtccacaaatggtaacttgtcatcttgtggaggaatttttagagac |
25929236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University