View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_2 (Length: 579)
Name: NF15931_low_2
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 564
Target Start/End: Complemental strand, 5162001 - 5161456
Alignment:
| Q |
19 |
tgaaaacagttccagcgaatatgaccggtcaatcgacacatgaacaaagacctgtcattagttgtttccataagctctagcagacaatctaaacaaaaaa |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||| |
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| T |
5162001 |
tgaaaacagttccagcgaatatgatcggtcaatcgacacatgaacaaagacctatcattagttgtttccataagctctagcagacagtccaaaaaaaaaa |
5161902 |
T |
|
| Q |
119 |
ttgtaatagatgtttatagattaattccattttaaagaaattaannnnnnnn-gttaagtagtccaatgattgaaatctcaccttttaaggtgaataagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161901 |
ctgtaatagatgtttatagattaattccattttaaagaaattaatttttttttgttaagtagtccaatgattgaaatctcaccttttaaggtgaataagt |
5161802 |
T |
|
| Q |
218 |
gggaaatacggattcgcaccccaacactgcatatataatgcaatctccannnnnnnctctcatgttctctaatgtgtcatgtcatcaatctcatccttaa |
317 |
Q |
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|||||||||||||||| |||| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161801 |
gggaaatacggattcgaacccga-caccgcatatataatgcaatctccatttttttctctcatgttctctaatgtgtcatgtcatcaatctcatccttaa |
5161703 |
T |
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| Q |
318 |
actttgtcatatctaaaactcaccttttttattcaattgtgtagattccaccattctctcatcaacaaagataatccattcccaataggtagaagcaaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161702 |
actttgtcatatctaaaactcaccttttttattcaattgtgtagattccaccattctctcatcaacaaagataatccattcccaataggtagaagcaaaa |
5161603 |
T |
|
| Q |
418 |
agcaagacattgctttccagttcattttctgaaattatacatttgtattgcacgatttaccaaaagcacatatctggaggaacaaaatttccaaactata |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5161602 |
agcaagacattgctttccagttcattttctgaaattatacatttgtattgcacgatttaccaaaagcacatatctggatgaacaaaatttccaaactata |
5161503 |
T |
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| Q |
518 |
gaaagtaaaagtagactttgaaaaagggtgccttctatggtgagaga |
564 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161502 |
gaaagtaaaagtagactttgaaaaagggtgccttctatggtgagaga |
5161456 |
T |
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