View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_22 (Length: 328)
Name: NF15931_low_22
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 11664417 - 11664712
Alignment:
| Q |
19 |
gttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattga |
118 |
Q |
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| T |
11664417 |
gttctgtggcacgtttcattgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattga |
11664516 |
T |
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| Q |
119 |
tggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaatatttataattttattgataagaataa |
218 |
Q |
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| T |
11664517 |
tggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaaaatttataattttattgataagaataa |
11664616 |
T |
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| Q |
219 |
ag---tatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgtaccatgtctctttannnnnnncttgttatgtattcat |
311 |
Q |
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| T |
11664617 |
agtaatatcaaatcatcaaataaatggaatgattttggtttaaccttaaaaaattgtgtatcatgtctctttatttttttcttgttatgtattcat |
11664712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 7344079 - 7343811
Alignment:
| Q |
19 |
gttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattga |
118 |
Q |
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| T |
7344079 |
gttctgtagcacgtttcattggaaacactggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattga |
7343980 |
T |
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| Q |
119 |
tggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatactt-caatatgaaaatatttataattttattgataagaata |
217 |
Q |
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| T |
7343979 |
tggagaaggagttgtctgcaaaagataatttcattgtccaaaagaggatgctgatgatacttcccata-gaaaa-aattataattttattaataagaata |
7343882 |
T |
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| Q |
218 |
aagtatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgta-ccatgtctcttt |
287 |
Q |
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| T |
7343881 |
aagtatcaaatcatcaaataacttgaatgattttggtttaaccttaaaaaaatgtgtattcatgtctcttt |
7343811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 11656013 - 11656091
Alignment:
| Q |
72 |
gtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttt |
150 |
Q |
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| T |
11656013 |
gtggagaatttgagtctccctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataatttt |
11656091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 11669796 - 11669858
Alignment:
| Q |
87 |
ctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt |
149 |
Q |
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| T |
11669796 |
ctccctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataattt |
11669858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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