View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15931_low_23 (Length: 284)
Name: NF15931_low_23
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 6191327 - 6191589
Alignment:
| Q |
10 |
agatgaaaaacttttggataagttaacttataccaactacttt-acatggtttggataaaacatttacaaatatttgtattgttctatgataattacaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6191327 |
agatgaaaaacttttggataagttaacttatatcaactactttgacatggtttggataaaacatttacaaatatttgtattgttctatgataattacaca |
6191426 |
T |
|
| Q |
109 |
atcgagaacaaaagtcatttctgctctaatgaaccaaggatgtggctgtaacacttcacattctttataataagaccataacttcacttgcaagcgacaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6191427 |
atcgagaacaaaagtcatttctgctctaatgaaccaaggatgtggctgtaacacttcacattctttataataagaccataacttcacttgcaagctacaa |
6191526 |
T |
|
| Q |
209 |
cccccttgctggtgtggattcatatatgagcatctggacaaactgaatttggcatcaaacctg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6191527 |
cccccttgctggtgtggattcatatatgagcatctggacaaactgaatttggcatcaaacctg |
6191589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University