View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_28 (Length: 250)
Name: NF15931_low_28
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 14757727 - 14757579
Alignment:
| Q |
1 |
aaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactc |
100 |
Q |
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| T |
14757727 |
aaatcatgttcgtcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactc |
14757628 |
T |
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| Q |
101 |
tttcatcattcttgaagttggatgaggcataataccacaacctacccca |
149 |
Q |
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| T |
14757627 |
tttcatcattcttgaagttggatgaggcataataccacaacctacccca |
14757579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 14757520 - 14757421
Alignment:
| Q |
148 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757520 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
14757421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 3613904 - 3613756
Alignment:
| Q |
1 |
aaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactc |
100 |
Q |
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|||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |
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| T |
3613904 |
aaatcacgttcatcggttttccagaacatgtctctttctcccaagctaaacaagccctaacattctcttgatttgcaaaagaatccgtccaacaatactc |
3613805 |
T |
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| Q |
101 |
tttcatcattcttgaagttggatgaggcataataccacaacctacccca |
149 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3613804 |
tttcaaggttcttgaagttggatgaggcataataccagaacctacccca |
3613756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 3613697 - 3613598
Alignment:
| Q |
148 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
247 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3613697 |
caagttgttgcatactgtattcatttatcttcaaattcaaccgattactagcgacatcgttgagattcctccaagcaacatcagtgacagacatgttatc |
3613598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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