View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_29 (Length: 247)
Name: NF15931_low_29
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 42518163 - 42518380
Alignment:
| Q |
4 |
ggttttaaatttaatctcatctacagttaatttgcgatatatcatagaaaattgagagacttatttcaagtttaaaatatttttcaccaaactatatatg |
103 |
Q |
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| T |
42518163 |
ggttttaaatttaatctcatctacagttaatttgcgatctatcattgaaaattgagagccttatttcaagtttaaaatatttttcaccaaactatatatg |
42518262 |
T |
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| Q |
104 |
ataataaaaagaactttagggaggatttggcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggactattattggttccat |
203 |
Q |
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| T |
42518263 |
ataataaaaagaactttagggaggatttgtcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggac---tattggttccat |
42518359 |
T |
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| Q |
204 |
tttgttgatattatcattcct |
224 |
Q |
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| T |
42518360 |
tttgttgatattatcattcct |
42518380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 42508739 - 42508919
Alignment:
| Q |
1 |
ctaggttttaaatttaatctcatctacagttaatttgcg----atatatcatagaaaattgagagacttatttcaagtttaaaatatttttcaccaaact |
96 |
Q |
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||||||||||||||||||||||||||| ||||||| | || ||||||| |||||||||| ||| ||| ||||| ||||||||||||| ||| || |
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| T |
42508739 |
ctaggttttaaatttaatctcatctacctttaatttacatacaatctatcatataaaattgaga--cttgttttaagttaaaaatatttttcatcaa-ct |
42508835 |
T |
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| Q |
97 |
atatatgataataaaaagaactttagggaggatttggcttttctttacatccctcttgatgcatcagaaaatgaaccctttaga |
180 |
Q |
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||| |||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||| |
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| T |
42508836 |
atacatgatagtaaaaagaacttttgggaggatttggcttttcattacatccttcttgatgtatcagaaaatgaaccatttaga |
42508919 |
T |
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