View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_3 (Length: 578)
Name: NF15931_low_3
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 12 - 578
Target Start/End: Original strand, 12364715 - 12365261
Alignment:
| Q |
12 |
attattctcatgttaactcataaaacattgttctcaaacccaaacttaatgaacaaatatgtattttgtaaggccacttgtggtctgtacggtccgtaat |
111 |
Q |
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| T |
12364715 |
attattctcatgttaactcataaaacattgttctcaaacccaaacttaatgaacaaacatgtattttgtaaggccacttgtggtctttacggtccgtaat |
12364814 |
T |
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| Q |
112 |
ccctatgagctttatcctcgggtttattaagggtatgtttggatgatggattttgaatggaaaggctttgattaggtgttaatctacctcgaaaaggtag |
211 |
Q |
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| T |
12364815 |
ccctatgagctttatcctcgggtttattaagggtatgtttggatgatggattttgaatggaaagtctttgattaggtgttaatctacctcgaaaaggtag |
12364914 |
T |
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| Q |
212 |
cttggcttgtgtaacatgaaatgcccgtgtgaccaatctgtttgttaattgtgacaagaaacaagaaaaccaaagaaagtgaaaaaacacccgaactagg |
311 |
Q |
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| T |
12364915 |
cttggcttgtgtaacatgaagtgcccgtgtgaccaatatgtttgttaattgtgacaagaaacaagaaaaccaaagaaagtgaaaaaacacccgaactagg |
12365014 |
T |
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| Q |
312 |
gacaaataaactcaacgatcatgacatccgctaagtgaatagacaatgaatccgtaggaacctaaagcaatgcaagtgattttgttaattgtgacatttt |
411 |
Q |
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| T |
12365015 |
gacaaataaactcaacgatcatgacatccgctaagtgaatagacaacgaatccgtaggaacc------------------ttagttaattgtgacatttt |
12365096 |
T |
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| Q |
412 |
gaaaataaatcattgcaatcattagattaattcaagtttgacaaatttatacaaaatctagtcaagtattttgatgataaacaatagaggagtgatattt |
511 |
Q |
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| T |
12365097 |
gaaaataaatcattgcaatcattagattaattcaagtttgacaaagttatacaaaatctagtcaagtattttgatgataaacaatagag--gtgatattt |
12365194 |
T |
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| Q |
512 |
ggtacgatatgttagagacgaaaatcgacaaatgaatatgtgtaaacggtgtgaacaaatataactt |
578 |
Q |
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| T |
12365195 |
ggtacgatatgttagagacgaaaatcgacaaatgaatatgtgtaaacagtgggaacaaatataactt |
12365261 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 577
Target Start/End: Complemental strand, 45778761 - 45778707
Alignment:
| Q |
523 |
ttagagacgaaaatcgacaaatgaatatgtgtaaacggtgtgaacaaatataact |
577 |
Q |
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| T |
45778761 |
ttagagacgaaaaacgacaaatgaatacgtgtaaacagtaggaacaaatataact |
45778707 |
T |
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