View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_31 (Length: 245)
Name: NF15931_low_31
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 49133590 - 49133372
Alignment:
| Q |
13 |
agcataggctatggtaccaatttttcccgaagaaagtcctgcaagtcatgttgtagcacgatatataaataaataaata----taaacaaagagagctac |
108 |
Q |
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| T |
49133590 |
agcataggctatggtaccaatttttcccgaagaaagtcctgcaagtcatgttgtagcgcgatatataaataaataaataaatataaacaaagagagctac |
49133491 |
T |
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| Q |
109 |
tttgatttttcaaaatcaaaatgtattttttcaaacttaccagctgctacgaatgtctctgatgtataaaatccaataccattaattccaacagattgtt |
208 |
Q |
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| T |
49133490 |
tttgatttttcaaaatcaaaatgtattttttcaaacttaccagctgctacgaatgtctctgatgtataaaatccaataccattaattccaacagattgtt |
49133391 |
T |
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| Q |
209 |
gacataccattaatccaac |
227 |
Q |
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| T |
49133390 |
gacataccattaatccaac |
49133372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 6927164 - 6927079
Alignment:
| Q |
143 |
acttaccagctgctacgaatgtctctgatgtataaaatccaataccattaattccaacagattgttgacataccattaatccaact |
228 |
Q |
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| T |
6927164 |
acttaccagctgctacaaaagtctcagctgtatagaatcctatgccattaattccaacagattgttgaaatgccattaatccaact |
6927079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 13883705 - 13883746
Alignment:
| Q |
186 |
accattaattccaacagattgttgacataccattaatccaac |
227 |
Q |
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| T |
13883705 |
accatcaattccaacagattgttcacataccattaatccaac |
13883746 |
T |
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