View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_34 (Length: 233)
Name: NF15931_low_34
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_34 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 5878279 - 5878087
Alignment:
| Q |
14 |
aatattattataaatatttttaaacatatacatgattaaaaagtatttgatgaaatatagataaaataaaagtgaacactcatgtaccctttaagttttt |
113 |
Q |
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| T |
5878279 |
aatattattataaatatttttaaacatatacatgattaaaaagtatttgatgaaatatagataaaataaaagtgaacactcatgtaccctttaaggatgt |
5878180 |
T |
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| Q |
114 |
aattgatgtgtataatcattaaattattcaatgtcatgttatatttttatattaatttatcttnnnnnnnnttcaaattttaagcctaaaaagtaccggt |
213 |
Q |
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| T |
5878179 |
aa--------aataatcattaaattattcaatgtcatgttatatttttatattaatttatcttaaaataaattcaaattttaagcctaaaaagtaccggt |
5878088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 5932987 - 5933025
Alignment:
| Q |
135 |
aattattcaatgtcatgttatatttttatattaatttat |
173 |
Q |
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| T |
5932987 |
aattatttaatgtcatgttatatttttattttaatttat |
5933025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 9897 - 9943
Alignment:
| Q |
127 |
aatcattaaattattcaatgtcatgttatatttttatattaatttat |
173 |
Q |
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| T |
9897 |
aatcatcaaattattcaacgtcatgtcatatttttatattaatttat |
9943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 54537851 - 54537895
Alignment:
| Q |
128 |
atcattaaattattcaatgtcatgttatatttttatattaattta |
172 |
Q |
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| T |
54537851 |
atcattcaatcattcaatatcatgttatatttttatattaattta |
54537895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 29597704 - 29597742
Alignment:
| Q |
135 |
aattattcaatgtcatgttatatttttatattaatttat |
173 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| |
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| T |
29597704 |
aattattcaatgacatgtcatatttttatattaatttat |
29597742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 173
Target Start/End: Original strand, 51205656 - 51205686
Alignment:
| Q |
143 |
aatgtcatgttatatttttatattaatttat |
173 |
Q |
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| T |
51205656 |
aatgtcatgttatatttttatattaatttat |
51205686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 1417438 - 1417476
Alignment:
| Q |
135 |
aattattcaatgtcatgttatatttttatattaatttat |
173 |
Q |
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||||||| |||| |||||||||||||||||||||||||| |
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| T |
1417438 |
aattattaaatgacatgttatatttttatattaatttat |
1417476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 6291980 - 6291948
Alignment:
| Q |
141 |
tcaatgtcatgttatatttttatattaatttat |
173 |
Q |
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| T |
6291980 |
tcaatgtcatgtaatatttttatattaatttat |
6291948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 34430448 - 34430481
Alignment:
| Q |
140 |
ttcaatgtcatgttatatttttatattaatttat |
173 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
34430448 |
ttcaatgtcatgtcatatttttatattaatttat |
34430481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 43844249 - 43844212
Alignment:
| Q |
128 |
atcattaaattattcaatgtcatgttatatttttatat |
165 |
Q |
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|||||| |||||||||||||||||| |||||||||||| |
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| T |
43844249 |
atcatttaattattcaatgtcatgtcatatttttatat |
43844212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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