View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_38 (Length: 223)
Name: NF15931_low_38
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 1193338 - 1193142
Alignment:
| Q |
9 |
acatcatcaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagagagcaa |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1193338 |
acatcaacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagagagcaa |
1193239 |
T |
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| Q |
109 |
gtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtattttataagtgttggaacaaaatgcttgggacttgg |
205 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
1193238 |
gtaaaaaaattcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtaatttataagtgttggaacaaaatacttgggacttgg |
1193142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 897104 - 896979
Alignment:
| Q |
72 |
atcacattttcttaaccacatactcattagagagcaagtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtatt |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||| || |||||| |||||||||||| |||||| || |
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| T |
897104 |
atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgtttt |
897005 |
T |
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| Q |
172 |
ttataagtgttggaacaaaatgcttg |
197 |
Q |
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||||||||||||||||||||| |||| |
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| T |
897004 |
ttataagtgttggaacaaaatacttg |
896979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 1182347 - 1182207
Alignment:
| Q |
53 |
agagagcacttatcatttcatcacattttcttaaccacatactcattag---agagcaagtnnnnnnnttcttagaaatcatattcatctacgatgcaat |
149 |
Q |
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| T |
1182347 |
agagagcacttatcactttatcacattttcttaaccacatattcattagtagagagcaagtaaaaaaattcttagaaaccatatacatccacaatacaat |
1182248 |
T |
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| Q |
150 |
aaagaaggcacattactgtattttataagtgttggaacaaa |
190 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||| |
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| T |
1182247 |
aaagaaggcacagtacggtattttataagtgttggaacaaa |
1182207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 1237419 - 1237566
Alignment:
| Q |
9 |
acatcatcaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagagagcaa |
108 |
Q |
| |
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|||||| ||||||| || |||||||||||||||||||||||| |||||| || ||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
1237419 |
acatcaacaaatctcaacacaagtataataatcatatactcattagagagaacctatcact--atcacattttcttaaccacatactcattagagtgcaa |
1237516 |
T |
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| Q |
109 |
gtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggc |
158 |
Q |
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|| |||||||||| ||||| |||| || |||||||||||||||| |
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| T |
1237517 |
gtaaaataattcttagaaaccatatacatccacaatgcaataaagaaggc |
1237566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 793863 - 793918
Alignment:
| Q |
55 |
agagcacttatcatttcatcacattttcttaaccacatactcattagagagcaagt |
110 |
Q |
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||||||||||||| || |||||||||||||||||||||| |||||| | ||||||| |
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|
| T |
793863 |
agagcacttatcactttatcacattttcttaaccacatattcattaaaaagcaagt |
793918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 896523 - 896463
Alignment:
| Q |
44 |
atactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagaga |
104 |
Q |
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||||||| ||||| ||||||||| || ||| |||||||||||||| |||||||||||||| |
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| T |
896523 |
atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga |
896463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 10203924 - 10203758
Alignment:
| Q |
11 |
atcatcaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagagagcaagt |
110 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10203924 |
atcaacaaatctaaatacaagtataacaatcacatactcactagagagcacttatcacttcatcacatttttttaaccacatactcattagagagcaagt |
10203825 |
T |
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| Q |
111 |
nnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtattttataa |
177 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
10203824 |
aaacaaattcttagaaatcatattcatctacgatgaaaaaaagaaggcacattcctgtattttataa |
10203758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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