View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_5 (Length: 507)
Name: NF15931_low_5
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Original strand, 37041016 - 37041501
Alignment:
| Q |
14 |
caaaggagggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttgaacnnnnnnngaagttaggctgctggga |
113 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37041016 |
caaaggagggggctagaccaaacctccttaatgagcaacaaacctaaagttaggcatccctaacttgttttgaacaaaaaaagaagttaggctgctggga |
37041115 |
T |
|
| Q |
114 |
atttgcatcaaaattgatggaagattacaagataaacttaaattagtca-----------cattggtttccctccctaaatatgtgtgagataataaaat |
202 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
37041116 |
atttgcatcaaaattgatggaagattacaagataaacttaaattaaccaagtgatctgtacattggtttccctccctaaatatgtgtgagataataaaat |
37041215 |
T |
|
| Q |
203 |
tcatatgagcttagcccacttaacttgggaaaatgatgnnnnnnngaaagcatatgcatctttctgagttagatcacctttgggagagtgtttcccaact |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37041216 |
tcatatgagcttagcccacttaacttgggaaaatgatgattttttgaaagcatacgcatctttctgagttagatcacctttgggagagtgtttccaaact |
37041315 |
T |
|
| Q |
303 |
agtttgtctctctgattaccggaagaaagagtaacttgtgaaacaaggaatctcaagttggtgaagtattgattcaaatcttctgatatattccaagtgt |
402 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37041316 |
agtttgtctctctgattaccagaagaaagagtaacttgtgaaacaaggaatctcaagttggggaagtattgattcaaatcttctgatatattccaagtgt |
37041415 |
T |
|
| Q |
403 |
gattagtaatgtagctatccaatttcttaggtaacaattggtccaaatgatcatgcaagttgtaagtttgtggaagcacctgtcta |
488 |
Q |
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| T |
37041416 |
gattagtaatgtagctatccaatttcttaggtaacaattggaccaaatgatcatgcaagttgtaagtttgtggaagcacctgtcta |
37041501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 249 - 486
Target Start/End: Original strand, 34243465 - 34243702
Alignment:
| Q |
249 |
aaagcatatgcatctttctgagttagatcacctttgggagagtgtttcccaactagtttgtctctctgattaccggaagaaagagtaacttgtgaaacaa |
348 |
Q |
| |
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||||| ||||| |||||||| | |||||| |||| || ||||||||||| ||||||||| |||||||||||||| |||| |||| | |||||||| |||| |
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| T |
34243465 |
aaagcgtatgcttctttctgggatagatcgccttgggtagagtgtttccaaactagtttatctctctgattacctgaaggaagatttacttgtgatacaa |
34243564 |
T |
|
| Q |
349 |
ggaatctcaagttggtgaagtattgattcaaatcttctgatatattccaagtgtgattagtaatgtagctatccaatttcttaggtaacaattggtccaa |
448 |
Q |
| |
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| ||||||||||| |||||||||||| | || ||||| || ||||||| ||||||||||| || ||||| |||||||| ||||| | | | |||| |
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| T |
34243565 |
tggttctcaagttggggaagtattgatttagctcatctgagatgttccaagaatgattagtaatatatctatctaatttctttggtaaaagcttgaccaa |
34243664 |
T |
|
| Q |
449 |
atgatcatgcaagttgtaagtttgtggaagcacctgtc |
486 |
Q |
| |
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||||||| ||| || |||||||| | ||||||||||| |
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| T |
34243665 |
atgatcaggcagattttaagtttgagcaagcacctgtc |
34243702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 14244125 - 14244193
Alignment:
| Q |
15 |
aaaggaggg-ggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgtt |
82 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
14244125 |
aaaggagggtggccaaaccaaacctccttaatgagtaacaaacctaaagttaagcatctctaacttgtt |
14244193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 34239516 - 34239571
Alignment:
| Q |
30 |
accaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttg |
85 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||| |
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|
| T |
34239516 |
accaaacctccttaatgagtaacaaacctaaagttagacatacctaacttgttttg |
34239571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 13138768 - 13138833
Alignment:
| Q |
21 |
gggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga |
86 |
Q |
| |
|
|||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
13138768 |
gggggccaaaccaaacctccttaatgggtaacaaacctaaagttaggcatccctaacttgttttga |
13138833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 24557468 - 24557533
Alignment:
| Q |
21 |
gggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga |
86 |
Q |
| |
|
|||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
24557468 |
gggggccaaaccaaacctccttaatgggtaacaaacctaaagttaggcatccctaacttgttttga |
24557533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 471
Target Start/End: Original strand, 13139854 - 13140076
Alignment:
| Q |
249 |
aaagcatatgcatctttctgagttagatcacctttgggagagtgtttcccaactagtttgtctctctgattaccggaagaaagagtaacttgtgaaacaa |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | || || |||| |||||| |||||||||||| || |||| ||| |||| | || || | |
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|
| T |
13139854 |
aaagcatatgcatctttctgagttaggtcacctttagaggaatgattccaaactagcgtgtctctctgatcactagaaggaagggtaatccgagagacca |
13139953 |
T |
|
| Q |
349 |
ggaatctcaagttggtgaagtattgattcaaatcttctgatatattccaagtgtgattagtaatgtagctatccaatttcttaggtaacaattggtccaa |
448 |
Q |
| |
|
|||||| || | ||||| ||||||||| |||||||| || |||||| ||||||| | || ||| | ||||| ||||||||||||| || || |
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| T |
13139954 |
acgatctcagattagggaagttttgattcaattcttctgaaatgttccaattgtgattgctgatatagttctccaacttcttaggtaacagctgaagcat |
13140053 |
T |
|
| Q |
449 |
atgatcatgcaagttgtaagttt |
471 |
Q |
| |
|
||||||||||| ||||||||||| |
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|
| T |
13140054 |
atgatcatgcacgttgtaagttt |
13140076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 471
Target Start/End: Original strand, 24558554 - 24558776
Alignment:
| Q |
249 |
aaagcatatgcatctttctgagttagatcacctttgggagagtgtttcccaactagtttgtctctctgattaccggaagaaagagtaacttgtgaaacaa |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | || || |||| |||||| |||||||||||| || |||| ||| |||| | || || | |
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|
| T |
24558554 |
aaagcatatgcatctttctgagttaggtcacctttagaggaatgattccaaactagcgtgtctctctgatcactagaaggaagggtaatccgagagacca |
24558653 |
T |
|
| Q |
349 |
ggaatctcaagttggtgaagtattgattcaaatcttctgatatattccaagtgtgattagtaatgtagctatccaatttcttaggtaacaattggtccaa |
448 |
Q |
| |
|
|||||| || | ||||| ||||||||| |||||||| || |||||| ||||||| | || ||| | ||||| ||||||||||||| || | |
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|
| T |
24558654 |
acgatctcagattagggaagttttgattcaattcttctgaaatgttccaattgtgattgctgatatagttctccaacttcttaggtaacagctgaagcgt |
24558753 |
T |
|
| Q |
449 |
atgatcatgcaagttgtaagttt |
471 |
Q |
| |
|
||||||||||| ||||||||||| |
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|
| T |
24558754 |
atgatcatgcacgttgtaagttt |
24558776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 13141786 - 13141833
Alignment:
| Q |
39 |
ccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga |
86 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13141786 |
ccttaatgagtaacaaacctaaagttaggcatccctaacttgttttga |
13141833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 486
Target Start/End: Original strand, 13142636 - 13142873
Alignment:
| Q |
249 |
aaagcatatgcatctttctgagttagatcacctttgggagagtgtttcccaactagtttgtctctctgattaccggaagaaagagtaacttgtgaaacaa |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | || || |||| |||||| |||||||||||| || |||| ||| |||| | || || | |
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|
| T |
13142636 |
aaagcatatgcatctttctgagttaggtcacctttagaggaatgattccaaactagcgtgtctctctgatcactagaaggaagggtaatccgagagacca |
13142735 |
T |
|
| Q |
349 |
ggaatctcaagttggtgaagtattgattcaaatcttctgatatattccaagtgtgattagtaatgtagctatccaatttcttaggtaacaattggtccaa |
448 |
Q |
| |
|
|||||| || | ||||| ||||||||| |||||||| || |||||| ||||||| | || ||| | ||||| ||||||||||||| || || |
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| T |
13142736 |
acgatctcagattagggaagttttgattcaattcttctgaaatgttccaattgtgattgttgatatagttctccaacttcttaggtaacagctgaagcat |
13142835 |
T |
|
| Q |
449 |
atgatcatgcaagttgtaagtttgtggaagcacctgtc |
486 |
Q |
| |
|
||||| ||||| |||||||||||| ||||| ||||||| |
|
|
| T |
13142836 |
atgataatgcacgttgtaagtttgaggaagaacctgtc |
13142873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 12488546 - 12488509
Alignment:
| Q |
50 |
aacaaacctaaagttaggcatccctaacttgttttgaa |
87 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
12488546 |
aacaaacctatagttaggcattcctaacttgttttgaa |
12488509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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