View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_6 (Length: 464)
Name: NF15931_low_6
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_6 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: scaffold1194 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 648 - 226
Alignment:
| Q |
16 |
ataattctggtatggtgtaatgtgataaacttattaatgcacaataatacaatccttaataatgcaatattttcaggtaagggatttcaacgttgcaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
648 |
ataattctggtatggtgtaatgtgataaacttattaatgcacaataatacaatccttaataatgcaatattttcaggtaagggatttcaacgttgcaaaa |
549 |
T |
|
| Q |
116 |
gaagaagctgatataagttattatgctggttatgttggtaagattttcttcnnnnnnnnnnnnagtattttctagaagaatattatcgttgatttatgtt |
215 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| | |||||||||||||| ||||| |||||| |
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| T |
548 |
gaagaagctgatataagttattacgctggttatgttggtaagaatttctt-------ttttttagtatttccaagaagaatattatcattgatatatgtt |
456 |
T |
|
| Q |
216 |
tttcattgaagatgattgaaaatgttgtaggatcttcattcatgcttggaagggctttgacatctatattatggggaatggtttctgatcgctatggccg |
315 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||||| |||||||||||||| |||||| ||| || |||||||||||||||| ||||||||||| || |
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| T |
455 |
cttcattgaag-tgactgaaaatgctgtaggatcttcgttcatgcttggaagatgtttgacgtctgtactatggggaatggtttcagatcgctatggtcg |
357 |
T |
|
| Q |
316 |
aaaacctgttataatcatgggaatcattgcagtgtaagtagcatctaacaaaagaatattgaaatggatgtttctttaagttatgttgtgggaattctct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
356 |
aaaacctgttataatcatgggaatcattgcagtgtaagtagtatctaacaaaagaatattgaaatggatgtttctttaagttatgttgtgggatgtctct |
257 |
T |
|
| Q |
416 |
cataattattgatgtttacttgatttcagtg |
446 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
256 |
cataattattgatgtttacttgatttcagtg |
226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 16529826 - 16529400
Alignment:
| Q |
16 |
ataattctggtatggtgtaatgtgataaacttattaatgcacaataatacaatccttaataatgcaa----tattttcaggtaagggatttcaacgttgc |
111 |
Q |
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||||| |||||||| | || ||||||||| | ||||||||||| ||||| | |||| ||||||| || ||| ||||||||||||||||||||||||| |
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| T |
16529826 |
ataatactggtatgatctactgtgataaaatgattaatgcaca-taatatactcctcaataatgaaactcttatgttcaggtaagggatttcaacgttgc |
16529728 |
T |
|
| Q |
112 |
aaaagaagaagctgatataagttattatgctggttatgttggtaagattttcttcnnnnnnnnnnnnagtattttctagaagaatattatcgttgattta |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||| || |
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| T |
16529727 |
aaaagaagaagctgatataagttattatgctggttatgttggtaagattttctt-------ttttttagtatttccaagaagaatattatcattgatata |
16529635 |
T |
|
| Q |
212 |
tgtttttcattgaagatgattgaaaatgttgtaggatcttcattcatgcttggaagggctttgacatctatattatggggaatggtttctgatcgctatg |
311 |
Q |
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|||| |||||||||| ||| |||||||| |||||||||||| |||||||||||||| |||||| ||| || |||||||||||||||| |||||||||| |
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| T |
16529634 |
tgttcttcattgaag-tgactgaaaatgctgtaggatcttcgttcatgcttggaagatgtttgacgtctgtactatggggaatggtttcagatcgctatg |
16529536 |
T |
|
| Q |
312 |
gccgaaaacctgttataatcatgggaatcattgcagtgtaagtagcatctaacaaaagaatattgaaatggatg-tttctttaagttatgttgtgggaat |
410 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| || ||||||||| | ||||| || || | |
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| T |
16529535 |
gtcgaaaacctgttataatcatgggaatcattgcagtgtaagtagtatccaacaaatgaatattgaaatgggtgttttctttaaatcatgttttgtgatt |
16529436 |
T |
|
| Q |
411 |
tctctcataattattgatgtttacttgatttcagtg |
446 |
Q |
| |
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|| |||||||| ||||||||| |||||||||||||| |
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| T |
16529435 |
tcgctcataatcattgatgttaacttgatttcagtg |
16529400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 328
Target Start/End: Complemental strand, 16521145 - 16521034
Alignment:
| Q |
217 |
ttcattgaagatgattgaaaatgttgtaggatcttcattcatgcttggaagggctttgacatctatattatggggaatggtttctgatcgctatggccga |
316 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| |||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
16521145 |
ttcattggtgataattgaaaatgttgtaggatcatcattcatgcttggtagaacattgacatctgtattatggggaatggtttctgatcgctatggtcga |
16521046 |
T |
|
| Q |
317 |
aaacctgttata |
328 |
Q |
| |
|
|||||||||||| |
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|
| T |
16521045 |
aaacctgttata |
16521034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 217 - 363
Target Start/End: Complemental strand, 16589634 - 16589487
Alignment:
| Q |
217 |
ttcattgaagatgattgaaaatgttgt-aggatcttcattcatgcttggaagggctttgacatctatattatggggaatggtttctgatcgctatggccg |
315 |
Q |
| |
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|||||||| ||||||||||||||| | ||||||||||| |||||||||||| ||| ||| || ||||||||||||||||||| ||||||||||| || |
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| T |
16589634 |
ttcattgattatgattgaaaatgtttttaggatcttcatacatgcttggaagatgtttcacagctgtattatggggaatggtttcagatcgctatggtcg |
16589535 |
T |
|
| Q |
316 |
aaaacctgttataatcatgggaatcattgcagtgtaagtagcatctaa |
363 |
Q |
| |
|
||||||||| |||| ||||| || || ||||||||||||| |||||| |
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| T |
16589534 |
aaaacctgtattaataatggggattatcgcagtgtaagtagtatctaa |
16589487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 16589792 - 16589685
Alignment:
| Q |
57 |
caataatacaatccttaataatgcaa----tattttcaggtaagggatttcaacgttgcaaaagaagaagctgatataagttattatgctggttatgttg |
152 |
Q |
| |
|
|||||||||||| || |||||||||| |||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
16589792 |
caataatacaatgctcaataatgcaacatttatttttaggtaagggacttcaatgttgcaaaagaagaagctgatattagttactatgctggttatattg |
16589693 |
T |
|
| Q |
153 |
gtaagatt |
160 |
Q |
| |
|
|||||||| |
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|
| T |
16589692 |
gtaagatt |
16589685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 26371250 - 26371190
Alignment:
| Q |
232 |
tgaaaatgttgtaggatcttcattcatgcttggaagggctttgacatctatattatgggga |
292 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| |||||||||| ||||| |||||| |
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|
| T |
26371250 |
tgaaaatgttgtaggatctgcatacatgcttggaagatctttgacatcaatattgtgggga |
26371190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 16589468 - 16589407
Alignment:
| Q |
386 |
tttctttaagttatgttgtgggaattctctcataattattgatg-tttacttgatttcagtg |
446 |
Q |
| |
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|||||||||||||||||||| || ||||| || |||| || ||| ||||||||||||||||| |
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|
| T |
16589468 |
tttctttaagttatgttgtgtgatttctcccacaattgttcatgttttacttgatttcagtg |
16589407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 354
Target Start/End: Original strand, 2620686 - 2620808
Alignment:
| Q |
232 |
tgaaaatgttgtaggatcttcattcatgcttggaagggctttgacatctatattatggggaatggtttctgatcgctatggccgaaaacctgttataatc |
331 |
Q |
| |
|
||||||||| |||||||| | | ||||||||| || |||| |||||||||||||||||||||| | | ||||||||||| |||||||||||| | || |
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|
| T |
2620686 |
tgaaaatgtcataggatctgcctacatgcttggtagagcttcgacatctatattatggggaatgatagccgatcgctatggtcgaaaacctgttgtgata |
2620785 |
T |
|
| Q |
332 |
atgggaatcattgcagtgtaagt |
354 |
Q |
| |
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|| ||||| ||| | |||||||| |
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| T |
2620786 |
ataggaattatttctgtgtaagt |
2620808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 2606086 - 2606145
Alignment:
| Q |
232 |
tgaaaatgttgtaggatcttcattcatgcttggaagggctttgacatctatattatgggg |
291 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||| |||| |||||| |
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|
| T |
2606086 |
tgaaaatgttgtaggatctgcattcatgcttggaagatctttgacatcaatatcatgggg |
2606145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 39160695 - 39160791
Alignment:
| Q |
234 |
aaaatgttgtaggatcttcattcatgcttggaagggctttgacatctatattatggggaatggtttctgatcgctatggccgaaaacctgttataat |
330 |
Q |
| |
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||||||||| ||||||||||| |||| |||| || |||||||||||||| | ||||| || | |||||||||||||| ||||||| |||||||| |
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| T |
39160695 |
aaaatgttgcaggatcttcatacatgtttggtagaactttgacatctatactgtggggtataatatctgatcgctatggtagaaaaccagttataat |
39160791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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