View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15931_low_7 (Length: 435)

Name: NF15931_low_7
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15931_low_7
NF15931_low_7
[»] chr7 (4 HSPs)
chr7 (1-220)||(32196197-32196416)
chr7 (284-417)||(32196000-32196133)
chr7 (47-135)||(7500917-7501005)
chr7 (1-46)||(7500853-7500898)
[»] chr1 (1 HSPs)
chr1 (47-159)||(43059679-43059791)
[»] chr8 (1 HSPs)
chr8 (47-135)||(10007314-10007402)
[»] chr3 (2 HSPs)
chr3 (47-135)||(47615122-47615210)
chr3 (1-46)||(47615229-47615274)
[»] chr6 (1 HSPs)
chr6 (50-120)||(7315865-7315935)
[»] chr5 (2 HSPs)
chr5 (47-135)||(18486449-18486537)
chr5 (1-46)||(18486556-18486601)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 32196416 - 32196197
Alignment:
Q  1 caacaaaacccccaagctaacttccaccaccaccgtagaccaagaatccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaa 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196416 caacaaaaaccccaagctaacttccaccaccaccgtagaccaagaaaccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaa 32196317  T
Q  101 cccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagggattatgcgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196316 cccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagggattatgcgag 32196217  T
Q  201 atgacaagggaaaagggaaa 220  Q
    ||||||||||||||||||||    
T  32196216 atgacaagggaaaagggaaa 32196197  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 284 - 417
Target Start/End: Complemental strand, 32196133 - 32196000
Alignment:
Q  284 tctgacggcaatgtttctggtagtgacagtgatttttctgatgatccacttgcggaggttgatttggataacattcttccctctaggactcggcggcgaa 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196133 tctgacggcaatgtttctggtagtgacagtgatttttctgatgatccacttgcggaggttgatttggataacattcttccctctaggactcggcggcgaa 32196034  T
Q  384 ctgctcagtctggagtgcgcatttctggtggcac 417  Q
    ||||||||||||||||||||||||||||||||||    
T  32196033 ctgctcagtctggagtgcgcatttctggtggcac 32196000  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 7500917 - 7501005
Alignment:
Q  47 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 135  Q
    |||||||||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||  |||||||||| || ||||| |||||    
T  7500917 tccgaacttccctccaccgtcaattgctcttccgacgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga 7501005  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7500853 - 7500898
Alignment:
Q  1 caacaaaacccccaagctaacttccaccaccaccgtagaccaagaa 46  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||    
T  7500853 caacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 7500898  T

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Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 43059791 - 43059679
Alignment:
Q  47 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgagg 146  Q
    ||||||||| || ||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||    
T  43059791 tccgaacttacctccaccgtcaattgctcttccgacgtcgttcccaacaacgaacccgaaaataacactgacgaagatgacgaagaggacgaagacgagg 43059692  T
Q  147 agaattccgatga 159  Q
    |||||| ||||||    
T  43059691 agaatttcgatga 43059679  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 10007402 - 10007314
Alignment:
Q  47 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 135  Q
    |||||||||||| ||||||||||||  ||||| ||||||| |||||||||||||||||||||  |||| ||||| || ||||| |||||    
T  10007402 tccgaacttccctccaccgtcaattgctcttctgacgccgatcccaacaacgaacccgaaaatgacaccgacgaagacgacgaggacga 10007314  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 47615210 - 47615122
Alignment:
Q  47 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 135  Q
    |||||||||||| ||||||||||||  |||| || ||||| |||||||||||||||||||||  |||||||||| || ||||| |||||    
T  47615210 tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga 47615122  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 47615274 - 47615229
Alignment:
Q  1 caacaaaacccccaagctaacttccaccaccaccgtagaccaagaa 46  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||    
T  47615274 caacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 47615229  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 7315935 - 7315865
Alignment:
Q  50 gaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacga 120  Q
    ||||||||| ||||||||||||  ||||||||| ||| |||||||||||||||||||||  ||||||||||    
T  7315935 gaacttccctccaccgtcaattgctcttccgacaccgatcccaacaacgaacccgaaaatgacactgacga 7315865  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 18486537 - 18486449
Alignment:
Q  47 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 135  Q
    |||||||||||| ||||||||||||  |||| || ||||| |||||||||||||| ||||||  |||||||||| || ||||| |||||    
T  18486537 tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaactcgaaaatgacactgacgaagacgacgaggacga 18486449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18486601 - 18486556
Alignment:
Q  1 caacaaaacccccaagctaacttccaccaccaccgtagaccaagaa 46  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||    
T  18486601 caacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 18486556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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