View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15931_low_8 (Length: 426)
Name: NF15931_low_8
Description: NF15931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15931_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 39672680 - 39672289
Alignment:
| Q |
16 |
aaaatcaagtaaactaaaaagaagcaaaatggataattagtaaattagacttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672680 |
aaaatcaagtaaactaaaaagaagcaaaatggataattagtaaattagacttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactc |
39672581 |
T |
|
| Q |
116 |
cattactaagaatcctaatagcaatagcactaccaataacctcttgtatgtcagaaccaataagagcaaactcagccataacccaaagcacatacctagc |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672580 |
cattactaagaatcctaatagcaatagcactaccaataacctcttgtatgtcagaaccaataagagcaaactcagccataacccaaagcacatacctagc |
39672481 |
T |
|
| Q |
216 |
ccatctaggatactcctccctacaaagctcagccaaatgcttccctgtagccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgtg |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
39672480 |
ccatctaggatactcctccctacaaagctcagccaaatgcttccctgtagccacaccaagcctagctgacaaaagctgaatcaaaagtcccatagctgtg |
39672381 |
T |
|
| Q |
316 |
gcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672380 |
gcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatact |
39672289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 407
Target Start/End: Original strand, 9562357 - 9562472
Alignment:
| Q |
292 |
tgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggat |
391 |
Q |
| |
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|||||||||||||||||| | | |||||||||||||| |||||||| |||||||||| ||| | ||||| || || ||| |||| ||||| || ||| |
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| T |
9562357 |
tgaatcaaaagccccatatcaatagcccacataagaagtcataacaatgaatacccagaaattgtaccagattaaagatcttcttccaagtttccaagat |
9562456 |
T |
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| Q |
392 |
ccaaaaacgctatact |
407 |
Q |
| |
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||||||| |||||||| |
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|
| T |
9562457 |
ccaaaaatgctatact |
9562472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 66 - 407
Target Start/End: Original strand, 5805221 - 5805562
Alignment:
| Q |
66 |
ttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatg |
165 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||||||| || |
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|
| T |
5805221 |
ttaccaatctaaagcagtaatgacaacaccagcccaaagaggaacaaggccattactcaaaatcctaatagcaatggcactaccaataacctcttgaata |
5805320 |
T |
|
| Q |
166 |
tcagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagccaaatg-cttccctgta |
264 |
Q |
| |
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||||||||||| | ||||| |||| ||| | |||||| ||| ||||||||| |||||||||| || |||||||| ||||||||||| |||||| ||| |
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|
| T |
5805321 |
tcagaaccaattaaagcaacttcagtcatcaaccaaagaacaatcctagcccaagtaggatactcatctctacaaagttcagccaaatgtcttccc-gta |
5805419 |
T |
|
| Q |
265 |
gccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagctt |
364 |
Q |
| |
|
|| ||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||| || |
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|
| T |
5805420 |
gcaacacctaaccttgctgacaaaagctgaatcaaaagccccatagcagtagcccacataagaagccataacaatgaatacccagcaattgcaccagatt |
5805519 |
T |
|
| Q |
365 |
gtaggtctccttctaagttccctggatccaaaaacgctatact |
407 |
Q |
| |
|
| || |||||||| ||||| || ||||||||||| |||||||| |
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| T |
5805520 |
gaagatctccttccaagtttccaggatccaaaaatgctatact |
5805562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 47290471 - 47290290
Alignment:
| Q |
67 |
taccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtatgt |
166 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| | ||| ||| |||||||||| |||||||||||||||||||||||||||||| || | |
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|
| T |
47290471 |
taccaatcagaagcagtaataagaacaccagcccaaagaggcaaaacaccacgactaagaatctgaatagcaatagcactaccaataacctcttgaatat |
47290372 |
T |
|
| Q |
167 |
cagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagc |
248 |
Q |
| |
|
||| |||||| | ||||| |||||||||| |||||||||||| || ||||| | ||||||||||| ||||||||||||| |
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|
| T |
47290371 |
cagcaccaatcaaagcaagttcagccataaaccaaagcacatatctcgcccaattcggatactcctctttacaaagctcagc |
47290290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 47290208 - 47290131
Alignment:
| Q |
330 |
ccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatact |
407 |
Q |
| |
|
||||| ||| |||||||| ||||| || || |||||||| || ||||| || ||||| ||||||||||| |||||||| |
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|
| T |
47290208 |
ccatagcaatgaataccctgcaatcgctcctgcttgtagatcaccttccaaattcccaggatccaaaaatgctatact |
47290131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 398
Target Start/End: Complemental strand, 10388442 - 10388109
Alignment:
| Q |
65 |
cttaccaatcaagagcagtaatgacaacaccagcccaaagaggaataactccattactaagaatcctaatagcaatagcactaccaataacctcttgtat |
164 |
Q |
| |
|
|||||||||||| || || || | |||||||||||||| |||| || ||||| ||||||||| ||| ||||||||||||||||||||||||||| || |
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|
| T |
10388442 |
cttaccaatcaaaggctgtgataataacaccagcccaaatgggaagaagtccatggctaagaatcttaagagcaatagcactaccaataacctcttgaat |
10388343 |
T |
|
| Q |
165 |
gtcagaaccaataagagcaaactcagccataacccaaagcacatacctagcccatctaggatactcctccctacaaagctcagccaaatgcttccctgta |
264 |
Q |
| |
|
|||| | |||| | ||| |||||||| | | ||| | | ||||||||| | | ||| ||||||||||||||||| ||||| || ||| || |
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|
| T |
10388342 |
atcagcagcaatcaaagccaactcagctaagaaccacaaaagtagcctagcccaattggaatattcctccctacaaagctccgccaagtggcgccccgtg |
10388243 |
T |
|
| Q |
265 |
gccacaccaagccttgctgacaaaagctgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagctt |
364 |
Q |
| |
|
|| ||||||||||| || || ||||| || || | |||||||| |||| |||||| | |||||| | ||| || ||||| ||||| ||||| |||| |
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|
| T |
10388242 |
gcaacaccaagcctcgccgataaaagttgtatgaggagccccattatggtggaccacattaaaagccaaagcaacgagtaccctgcaatcgcaccggctt |
10388143 |
T |
|
| Q |
365 |
gtaggtctccttctaagttccctggatccaaaaa |
398 |
Q |
| |
|
| | ||||||||||| ||| |||||||||||||| |
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|
| T |
10388142 |
gcaagtctccttctatgtttcctggatccaaaaa |
10388109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 407
Target Start/End: Original strand, 21016784 - 21016902
Alignment:
| Q |
289 |
agctgaatcaaaagccccatagctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctg |
388 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||| |||||||| ||||||| || ||| |||||| ||| || |||||||| ||||| || | |
|
|
| T |
21016784 |
agctgaatcaaaagccctgtagtagtagcccacataagaagtcataacaacgaataccaagaaattacaccagattgaagatctccttccaagtttccag |
21016883 |
T |
|
| Q |
389 |
gatccaaaaacgctatact |
407 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
21016884 |
gatccaaaaatgttatact |
21016902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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