View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_106 (Length: 236)

Name: NF15932_high_106
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_106
NF15932_high_106
[»] chr4 (5 HSPs)
chr4 (16-217)||(24839959-24840160)
chr4 (16-217)||(24843417-24843618)
chr4 (16-188)||(24760075-24760247)
chr4 (16-188)||(24777193-24777365)
chr4 (150-186)||(12411259-12411295)
[»] scaffold1886 (1 HSPs)
scaffold1886 (16-217)||(924-1125)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 24840160 - 24839959
Alignment:
Q  16 aagaaaaacatagaaatagttggtgagaaattttatacgacactttaagaggtacaacaataacaatgcatagaaacaaatacacgaataactatttatg 115  Q
    |||||| ||||||||||||   ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840160 aagaaatacatagaaatagggtgtgagaaatgttatacaacactttaagaggtacaacaataacaatgcatagaaacaaatacacgaataactatttatg 24840061  T
Q  116 attggaaactatctgatgtgtacnnnnnnnttgaacaagagaaacatatatcaaatgaacagttcctacacgtatggatgaacaaggttgattattggtc 215  Q
    |||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||    
T  24840060 attggaaactatctgaggtgtacaaaaaaattgaacaagagaaacatatatcaaatgaacagttcccacacgtatggatgaacaaggttgatcattgatc 24839961  T
Q  216 cc 217  Q
    ||    
T  24839960 cc 24839959  T

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Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 24843618 - 24843417
Alignment:
Q  16 aagaaaaacatagaaatagttggtgagaaattttatacgacactttaagaggtacaacaataacaatgcatagaaacaaatacacgaataactatttatg 115  Q
    |||||| ||||||||||||   ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24843618 aagaaatacatagaaatagggtgtgagaaatgttatacaacactttaagaggtacaacaataacaatgcatagaaacaaatacacgaataactatttatg 24843519  T
Q  116 attggaaactatctgatgtgtacnnnnnnnttgaacaagagaaacatatatcaaatgaacagttcctacacgtatggatgaacaaggttgattattggtc 215  Q
    |||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||    
T  24843518 attggaaactatctgaggtgtacaaaaaaattgaacaagagaaacatatatcaaatgaacagttcccacacgtatggatgaacaaggttgatcattgatc 24843419  T
Q  216 cc 217  Q
    ||    
T  24843418 cc 24843417  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 24760247 - 24760075
Alignment:
Q  16 aagaaaaacatagaaa-tagttggtgagaaattttatacgacactttaagaggtacaacaataacaatgcatagaaacaaatacacgaataactatttat 114  Q
    |||||| ||||||||| |||  |||||||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||| ||| ||||| | |||||    
T  24760247 aagaaacacatagaaaatagggggtgagaaatgttatacgatacttaaagtggtacaacaataacaatgcatataaacaaatgcacaaataaatgtttat 24760148  T
Q  115 gattggaaactatctgatgtgtacnnnnnnnttgaacaagagaaacatatatcaaatgaacagttcctacacgt 188  Q
    ||||| |||| ||||||  |||||       ||||||||||||||||||||||||||||||  |||||||||||    
T  24760147 gattgcaaaccatctgaactgtac-ataaaattgaacaagagaaacatatatcaaatgaactcttcctacacgt 24760075  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 24777365 - 24777193
Alignment:
Q  16 aagaaaaacatagaaa-tagttggtgagaaattttatacgacactttaagaggtacaacaataacaatgcatagaaacaaatacacgaataactatttat 114  Q
    |||||| ||||||||| |||  ||||||| || ||||||||||||| ||| ||||||||| || ||||||||||||||||| ||||  |||   |||| |    
T  24777365 aagaaacacatagaaaatagagggtgagatatgttatacgacacttaaagtggtacaacattagcaatgcatagaaacaaacacacatatagacattttt 24777266  T
Q  115 gattggaaactatctgatgtgtacnnnnnnnttgaacaagagaaacatatatcaaatgaacagttcctacacgt 188  Q
    ||||| |||| |||||| ||||||       ||||||||||||   |||||||||||||||  |||||||||||    
T  24777265 gattgcaaaccatctgaggtgtac-atataattgaacaagagacttatatatcaaatgaaccattcctacacgt 24777193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 12411259 - 12411295
Alignment:
Q  150 acaagagaaacatatatcaaatgaacagttcctacac 186  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  12411259 acaagagatacatatatcaaatgaaccgttcctacac 12411295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1886 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold1886
Description:

Target: scaffold1886; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 1125 - 924
Alignment:
Q  16 aagaaaaacatagaaatagttggtgagaaattttatacgacactttaagaggtacaacaataacaatgcatagaaacaaatacacgaataactatttatg 115  Q
    |||||| |||| |||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  1125 aagaaatacattgaaatagggtgtgagaaatgttatacgacactttaagaggtacaacaataacaatgcataaaaacaaatactagaataactatttatg 1026  T
Q  116 attggaaactatctgatgtgtacnnnnnnnttgaacaagagaaacatatatcaaatgaacagttcctacacgtatggatgaacaaggttgattattggtc 215  Q
    ||||||||| |||||| ||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1025 attggaaaccatctgaggtgtacaaaaaagttgaacaagagaaacatatataaaatgaacagttcctacacgtatggataaacaaggttgattattggtc 926  T
Q  216 cc 217  Q
    ||    
T  925 cc 924  T

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