View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_109 (Length: 232)
Name: NF15932_high_109
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_109 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 43625275 - 43625472
Alignment:
| Q |
16 |
atgaacagattgggagtgaattaagaaagttcacttcctaatacatagaattagataatggtaattccaataaggcactatgaatgtcaattatagaaga |
115 |
Q |
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| T |
43625275 |
atgaacagattgggagtgaattaagaaagttcacttcctaatacatagaattagataatggta-ttccaataaggcactatgaatgtcaattatagaaga |
43625373 |
T |
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| Q |
116 |
ttcaactcactttctagtctgtttcttttcttattgagtcaacaaaaagttgaaaaagaaagtaacagataggatttaggaaagactagcagccaaaat |
214 |
Q |
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| T |
43625374 |
ttcaactcactttctagtctgtttcttttcttattgagtcaacaaaaagttgaaaaagaaagtaacagataggatttaggaaagactagcagccaaaat |
43625472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 35901286 - 35901138
Alignment:
| Q |
68 |
agataatggtaattccaataaggcactatgaatgtcaattatagaagattcaactcactttctagtctgtttcttttcttattgagtcaacaaaaagttg |
167 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| |
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| T |
35901286 |
agatcatggtaattccaataaggcactatgaatgttaattatagaagattcaactcactttctagtatgtgcctttttctattgagtcagaaaaaagttg |
35901187 |
T |
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| Q |
168 |
aaaaagaaagtaacagataggatttag--gaaagactagcagccaaaat |
214 |
Q |
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| T |
35901186 |
aaaaagaaagtaacagataggatttaggagaaagactagcagccaaaat |
35901138 |
T |
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