View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_116 (Length: 212)
Name: NF15932_high_116
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_116 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 37601836 - 37602015
Alignment:
| Q |
19 |
aaatttaatttaattccatttggttttgtagattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagattt |
118 |
Q |
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| T |
37601836 |
aaatttaatttaattccatttggttttgtagattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagattt |
37601935 |
T |
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| Q |
119 |
aaagaggtacttagaggttttaatagtgtcattattatgcatcctatttcttataagaatttatctggtgttattttctt |
198 |
Q |
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| T |
37601936 |
aaagaggtacttagaggttttaatagtgtcattattatgcatcctatttcttataagaatttacctggtgttattttctt |
37602015 |
T |
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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 39410650 - 39410729
Alignment:
| Q |
48 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggta |
127 |
Q |
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| T |
39410650 |
agattgatgagcatgttcaaagggagattataaatcataggtccttgaagcatcccaatatcattagatttaaagaggta |
39410729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 27107793 - 27107715
Alignment:
| Q |
48 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggt |
126 |
Q |
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| T |
27107793 |
agattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggt |
27107715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 12309285 - 12309331
Alignment:
| Q |
65 |
caaagggagattataaatcataggtcattgaagcatcccaatattgt |
111 |
Q |
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| T |
12309285 |
caaagggaaattataaatcatagatcactgaggcatcccaatattgt |
12309331 |
T |
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