View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_122 (Length: 204)
Name: NF15932_high_122
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_122 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8913840 - 8914032
Alignment:
| Q |
1 |
aaagagcatttggttcttttctctatatagtcatagtcacagtgactcatacagtactctcctttaactttcaaaatatgctgctctttgaagctttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8913840 |
aaagagcatttggttcttttctctatatagtcatagtcacagtgactcatacagtactctcctttaactttcaaaatatgctgctctttgaagctttttg |
8913939 |
T |
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| Q |
101 |
ctaaaaatgaaacattctttgtatggaaccaattgttgataaaatcagttcagtttctgtcgttatattgaatgaaatgatcgattaattcat |
193 |
Q |
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| T |
8913940 |
ctaaaaatgaaacattctttgtatggaaccaattgttgataaaatcagttcagtttctgtcgttatattgaatgaaatgatcgattaattcat |
8914032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 8346823 - 8346999
Alignment:
| Q |
1 |
aaagagcatttggttcttttctctatatagtcatagtcacagtgactcat----------acagtactctcctttaactttcaaaatatgctgctctttg |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
8346823 |
aaagagcatttggttcttttctctatatagtcatagtcacagtgactcattgagaacaaaacagtactctcctttaactttcaaaatatgctgcgctttg |
8346922 |
T |
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| Q |
91 |
aagctttttgctaaaaatgaaacattctttgtatggaaccaattgttgataaaatca-gttcagtttctgtcgttat |
166 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
8346923 |
aagctttttgctaaaaatggaacattctttgtatagaaccaattgttgatataatcatgttcagtttctgtcattat |
8346999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 42822798 - 42822622
Alignment:
| Q |
1 |
aaagagcatttggttcttttctctatatagtcatagtcacagtgactcat----------acagtactctcctttaactttcaaaatatgctgctctttg |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
42822798 |
aaagagcatttggttcttttctctatatagtcatagtcacagtgactcattgagaacaaaacagtactctcctttaactttcaaaatatgctgcgctttg |
42822699 |
T |
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| Q |
91 |
aagctttttgctaaaaatgaaacattctttgtatggaaccaattgttgataaaatca-gttcagtttctgtcgttat |
166 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
42822698 |
aagctttttgctaaaaatggaacattctttgtatagaaccaattgttgatataatcatgttcagtttctgtcattat |
42822622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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