View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_high_17 (Length: 503)
Name: NF15932_high_17
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Original strand, 33308987 - 33309461
Alignment:
| Q |
16 |
aagaaggtagtataagccagcaccaactggtaaagtgaagcctacaccagcaattgcaacaaccattgctttcttattgtagtaaaaccttgtaattgat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
33308987 |
aagaaggtagtataagccagcaccaactggtaaagtgaagcctacaccagcaattgcaacaaccattgctttcttattgtagtaaaaccttgtgattggt |
33309086 |
T |
|
| Q |
116 |
ttcaagtctacttctaagccaaccaagaacacatagtaaacaagtgttaatgctcccactgtctctaatggtaacatattactataagggaatatgcttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
33309087 |
ttcaagtctacttctaagccaaccaagaacacatagtaaacaagtgttaatgctcccactgtctctaatggtaacatattgctgtaagggaatatgcttt |
33309186 |
T |
|
| Q |
216 |
tgaatacattattccattttcccaaagcagatggacctattaaaaaaccagtctagcaaaacaatcacaaagattaggtaatgtttttcatatacataaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33309187 |
tgaatacattattccattttcccaaagcagatggacctattaaaaaaccagtctagcaaaacaatcacaaagattaggtaatgtttttcatatacataaa |
33309286 |
T |
|
| Q |
316 |
atatagtatgaaaaatgtaaaggatactcaaatcttcaggagtttaaaaaatgaatcattacaactattagcgaagaaataataatgaaatgaaagggtt |
415 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33309287 |
atatagtatgaaaaatgtaaaggataatcaaatcttcaggagtttaaaaaatgagtcattacaactattagcgaagaaataataatgaaatgaaagggtt |
33309386 |
T |
|
| Q |
416 |
agaagaatatacttacaaaaatgttgggaacaatacgaggtacattgcataattcagagacaaagaggaaaatac |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33309387 |
agaagaatatacttacaaaaatgttgggaacaatacgaggtacattgcataattcagagacaaagaggaaaatac |
33309461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University