View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_23 (Length: 456)

Name: NF15932_high_23
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_23
NF15932_high_23
[»] chr3 (3 HSPs)
chr3 (186-443)||(49821773-49822030)
chr3 (1-159)||(49821589-49821746)
chr3 (309-364)||(31685987-31686042)
[»] chr1 (1 HSPs)
chr1 (1-78)||(30218392-30218469)
[»] chr4 (1 HSPs)
chr4 (240-364)||(55820151-55820275)
[»] chr5 (3 HSPs)
chr5 (281-364)||(26854967-26855050)
chr5 (331-380)||(30442912-30442961)
chr5 (77-113)||(16222710-16222746)
[»] chr7 (1 HSPs)
chr7 (331-380)||(14231934-14231983)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 186 - 443
Target Start/End: Original strand, 49821773 - 49822030
Alignment:
Q  186 tcaaattgtatatgggcaacttatgttggatgtttacacattttggaaaacctctttgtacactacatttgacgtcgtagtgatgtaatcgtcaatttca 285  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  49821773 tcaaattgtatatgggcaacttatgttggatgtttacacattttagaaaacctctttgtacattacatttgacgtcgtagtgatataatcgtcaatttca 49821872  T
Q  286 tcggtcaacagaatttttagacaacttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccggttgcagaagatagatactaa 385  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  49821873 tcagtcaacagaatttttagactacttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccggttgcggtagatagatcctaa 49821972  T
Q  386 ttccttaatgtcggacgctcaattgcaaacgatatagtgtgtgcacgtatttgttact 443  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49821973 ttccttaatgtcagacgctcaattgcaaacgatatagtgtgtgcacgtatttgttact 49822030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 49821589 - 49821746
Alignment:
Q  1 cttacaagtggaggatcgaagagacaaagaaaaatgaaaaatggcagctgtactggacaataataacaattaggtttactagatcgtctacccgtgatgt 100  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  49821589 cttacaagttgaggatcgaaaagacaaagaaaaatgaaaaatggcagctgtactggacaatagtaacaattaggtttgctagatcgtctacccgtgatgt 49821688  T
Q  101 cgcacatgtcataaatattatgnnnnnnntatgtgaagcacaaattataaccacaaaat 159  Q
    |||||   ||||||||||||||       |||||||| |||||||||||||||||||||    
T  49821689 cgcacggatcataaatattatg-aaaaaatatgtgaaacacaaattataaccacaaaat 49821746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 31686042 - 31685987
Alignment:
Q  309 acttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccg 364  Q
    |||||| || |||||| ||||||||||||||||||| |||| ||| ||||||||||    
T  31686042 acttcttgatgtaactcttgagattgcaacatatagttgaccatgggagaagaccg 31685987  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30218392 - 30218469
Alignment:
Q  1 cttacaagtggaggatcgaagagacaaagaaaaatgaaaaatggcagctgtactggacaataataacaattaggttta 78  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  30218392 cttacaagtggaggatcgaaaagacaaagaaaaatgaaaaatggcagctgtactgtacaatagtaacaattaggttta 30218469  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 240 - 364
Target Start/End: Original strand, 55820151 - 55820275
Alignment:
Q  240 tttgtacactacatttgacgtcgtagtgatgtaatcgtcaatttcatcggtcaacagaatttttagacaacttctcgacgtaactattgagattgcaaca 339  Q
    ||||||| ||||||||||||||||| ||||| |||||||  |||||||  |||||| |||||||| || |  ||||||||||||| ||||||||||||||    
T  55820151 tttgtacgctacatttgacgtcgtattgatgcaatcgtcgttttcatcaatcaacaaaatttttataccatctctcgacgtaactcttgagattgcaaca 55820250  T
Q  340 tatagctgacaatgagagaagaccg 364  Q
    |||||||||| ||| ||||| ||||    
T  55820251 tatagctgaccatgggagaataccg 55820275  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 26855050 - 26854967
Alignment:
Q  281 tttcatcggtcaacagaatttttagacaacttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccg 364  Q
    |||| ||||||| || |||||| || | |||||| || |||||| ||||||||||||||||||| |||| ||| ||||| ||||    
T  26855050 tttcgtcggtcatcaaaattttaagcccacttcttgatgtaactcttgagattgcaacatatagttgaccatgggagaataccg 26854967  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 30442912 - 30442961
Alignment:
Q  331 attgcaacatatagctgacaatgagagaagaccggttgcagaagatagat 380  Q
    ||||||||||||||||| | ||| ||||||||||||||  ||||||||||    
T  30442912 attgcaacatatagctgcccatgtgagaagaccggttgtggaagatagat 30442961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 16222746 - 16222710
Alignment:
Q  77 tactagatcgtctacccgtgatgtcgcacatgtcata 113  Q
    |||||||||||||||||||| || |||||||||||||    
T  16222746 tactagatcgtctacccgtgctgccgcacatgtcata 16222710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 14231983 - 14231934
Alignment:
Q  331 attgcaacatatagctgacaatgagagaagaccggttgcagaagatagat 380  Q
    ||||||||||||||||| | ||| ||||||||||||||  ||||||||||    
T  14231983 attgcaacatatagctgcccatgtgagaagaccggttgtggaagatagat 14231934  T

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