View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_34 (Length: 406)
Name: NF15932_high_34
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 24327902 - 24328292
Alignment:
| Q |
16 |
atgagcaaatgcacaaggcagcatcaagtgctaagctagacatgcgcagtagagatggtggaaaggaaaaaagagtagagaattttaatgaaccaaatat |
115 |
Q |
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| T |
24327902 |
atgagcaaatgcacaaggcagcatcaagtgctaagctagacatgcgcagtagagatggtggaaaggataaaagagtagagaattttaatgaaccaaatat |
24328001 |
T |
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| Q |
116 |
tgataatgttgtgcaagctatgctccggaaaaacgagccgtttgttcatcttttgcctagagacagccctcagaatagtcattgtggagttcctcatata |
215 |
Q |
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| T |
24328002 |
tgataatgttgtgcaagctatgctcaggaaaaacgagccgtttgttcatcttttgcctagagacagccctcagaatagtcattgtggagttcctcatata |
24328101 |
T |
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| Q |
216 |
caaacgttcttagctcagaaatcagaaaagtatagtcgattgagcttttcagaacagcctaaggaactctgtcagaaagaactaaattatgatgtttcgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24328102 |
caaacgttcttagctcagaaatcagaaaagtatagtcgattgagcttttcagaacagcctaaggaactctgtcagaaagaactaaattatgatgtttcgc |
24328201 |
T |
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| Q |
316 |
attccggtagccttcctgatgagcttggctgtaatgattctcagaataaaggttctggttgcagttccacagatattgaaagtagcaaact |
406 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24328202 |
attcaggtagccttcctgatgagcttggctgtaatgattctcagaataaaggttctggttgcagttccacagatattgaaagtagcaaact |
24328292 |
T |
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