View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_35 (Length: 405)

Name: NF15932_high_35
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_35
NF15932_high_35
[»] chr4 (5 HSPs)
chr4 (7-259)||(12696830-12697083)
chr4 (300-388)||(12698046-12698134)
chr4 (188-236)||(12685764-12685812)
chr4 (12-68)||(12685357-12685414)
chr4 (304-364)||(17231992-17232052)
[»] chr7 (4 HSPs)
chr7 (304-364)||(30662219-30662279)
chr7 (307-348)||(4048429-4048470)
chr7 (307-364)||(27280825-27280882)
chr7 (307-348)||(30662175-30662216)
[»] chr5 (8 HSPs)
chr5 (307-348)||(23661899-23661940)
chr5 (307-348)||(23796630-23796671)
chr5 (304-366)||(38682818-38682880)
chr5 (308-364)||(4943117-4943174)
chr5 (307-364)||(19550163-19550220)
chr5 (307-364)||(20927849-20927906)
chr5 (307-364)||(20928092-20928149)
chr5 (321-361)||(14604356-14604396)
[»] chr3 (3 HSPs)
chr3 (304-364)||(18020035-18020095)
chr3 (311-364)||(36900154-36900207)
chr3 (304-348)||(36667293-36667337)
[»] chr2 (1 HSPs)
chr2 (304-364)||(31630129-31630189)
[»] chr6 (3 HSPs)
chr6 (307-364)||(21598449-21598506)
chr6 (307-364)||(24059729-24059786)
chr6 (304-364)||(17136908-17136968)
[»] chr1 (1 HSPs)
chr1 (304-364)||(1173076-1173135)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 12696830 - 12697083
Alignment:
Q  7 agaaaaaggatctgagaatttgttccatactaaaaaattcggtttt-tatgaggaccaaggtgtgccatgcaggaaggatgtgaatttcaattatgcaca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  12696830 agaaaaaggatctgagaatttgttccatactaaaaaattcggttttttatgaggaccgaggtgtgccatgcgggaaggatgtgaatttcaattgtgcaca 12696929  T
Q  106 tactatgaactaataatgaagcttgtgccaataattaggagtagctagttggtgtttatctttcctttcaattttaactgataagagtgacatttatgtg 205  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12696930 tactatgaactaataatgaagcttgtgtcaataattaggagtagctagttggtgtttatctttcctttcaattttaactgataagagtgacatttatgtg 12697029  T
Q  206 agtagggcctcaagcctaaatgagtgaaacatatcttgtccaagttgagtttga 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12697030 agtagggcctcaagcctaaatgagtgaaacatatcttgtccaagttgagtttga 12697083  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 388
Target Start/End: Original strand, 12698046 - 12698134
Alignment:
Q  300 ttacaaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaagacctgtttagcctttttatttga 388  Q
    |||||||||||  |||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  12698046 ttacaaagactcgtgtgtaaataaaataacttaaatgataaatctgttatcgatctcaaacttaagacctctttagcctttttatttga 12698134  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 12685764 - 12685812
Alignment:
Q  188 aagagtgacatttatgtgagtagggcctcaagcctaaatgagtgaaaca 236  Q
    ||||| ||||||||||||||||||||| |||| ||||||| ||||||||    
T  12685764 aagagggacatttatgtgagtagggccacaagtctaaatgggtgaaaca 12685812  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 12685357 - 12685414
Alignment:
Q  12 aaggatctgagaatttgttccatactaaaaaattcgg-tttttatgaggaccaaggtg 68  Q
    |||||||| | ||| || |||| |||||||||||||| ||||||||||||||||||||    
T  12685357 aaggatctcaaaatgtgatccaaactaaaaaattcgggtttttatgaggaccaaggtg 12685414  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 17232052 - 17231992
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||||||| | |||||||||||||||||   ||||||||  || |||||||||||    
T  17232052 aaagacttatgtgtgatcaaaataacttaaaagacttatctgttacaaacctcaaacttaa 17231992  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 30662279 - 30662219
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    ||||||||||||||||  ||||||| ||||| ||| |||||||||| ||||||||||||||    
T  30662279 aaagacttatgtgtaattaaaataatttaaatgatcaatctgttataaatctcaaacttaa 30662219  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 4048429 - 4048470
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgtta 348  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  4048429 gacttatgtgtaaccaaaataacttaaatgatcaatctgtta 4048470  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 27280825 - 27280882
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    ||||||||||| | |||||||||||||| ||| ||| |||||| || |||||||||||    
T  27280825 gacttatgtgttaccaaaataacttaaaggatcaatttgttatgaacctcaaacttaa 27280882  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 30662216 - 30662175
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgtta 348  Q
    ||||||||||||| |||||||||||||||||  |||||||||    
T  30662216 gacttatgtgtaatcaaaataacttaaaagactaatctgtta 30662175  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 23661940 - 23661899
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgtta 348  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  23661940 gacttatgtgtaaccaaaataacttaaaagatcaatctgtta 23661899  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 23796630 - 23796671
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgtta 348  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  23796630 gacttatgtgtaaccaaaataacttaaaagatcaatctgtta 23796671  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 38682818 - 38682880
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaaga 366  Q
    |||||||||||||||| ||||||||||| || ||| ||||| |||  || |||||||||||||    
T  38682818 aaagacttatgtgtaaccaaaataactttaaggatcaatctattacaaacctcaaacttaaga 38682880  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 4943117 - 4943174
Alignment:
Q  308 acttatgtgtaagcaaaataacttaaaa-gataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||| | ||||||||||||||| ||| |||||||||| ||| ||||||||||    
T  4943117 acttatgtgtgaccaaaataacttaaaaggatcaatctgttataaatttcaaacttaa 4943174  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 19550220 - 19550163
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    ||||||||||||| |||||||||||||| ||| ||  |||||  ||||||||||||||    
T  19550220 gacttatgtgtaaccaaaataacttaaatgatcaaaatgttaaaaatctcaaacttaa 19550163  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 20927906 - 20927849
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||||||  ||||||||||||| ||| ||||| |||  ||||||||||||||    
T  20927906 gacttatgtgtaactaaaataacttaaatgatcaatctattacaaatctcaaacttaa 20927849  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 20928092 - 20928149
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    ||||||||||| | |||||||||||||| || ||||||||||| || |||||| ||||    
T  20928092 gacttatgtgtgaccaaaataacttaaaggacaaatctgttataaacctcaaagttaa 20928149  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 14604356 - 14604396
Alignment:
Q  321 caaaataacttaaaagataaatctgttatcaatctcaaact 361  Q
    |||||||||||||||||| |||||||||  |||||||||||    
T  14604356 caaaataacttaaaagattaatctgttacgaatctcaaact 14604396  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 18020035 - 18020095
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||| || || ||||||||    
T  18020035 aaagacttatgtgtaaccaaaataacttaaacgaccaatctgttataaaccttaaacttaa 18020095  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 36900154 - 36900207
Alignment:
Q  311 tatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    ||||||||| |||||||||||||| ||  ||||| |||| ||||||||||||||    
T  36900154 tatgtgtaaccaaaataacttaaaggaccaatctattataaatctcaaacttaa 36900207  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 36667293 - 36667337
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgtta 348  Q
    |||||||||||||| | |||||||||||||| || ||||||||||    
T  36667293 aaagacttatgtgtgaccaaaataacttaaaggacaaatctgtta 36667337  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 31630189 - 31630129
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||||||| | |||||||||||||| ||| |||||||||  || |||||||||||    
T  31630189 aaagacttatgtgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacttaa 31630129  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 21598506 - 21598449
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||| || |||||||||||||| ||  |||||||||| || |||||||||||    
T  21598506 gacttatgtgcaaccaaaataacttaaaggaccaatctgttataaacctcaaacttaa 21598449  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 24059786 - 24059729
Alignment:
Q  307 gacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    ||||||||||| | |||||||| ||||| ||| |||||||||| || |||||||||||    
T  24059786 gacttatgtgtgaccaaaataatttaaatgatcaatctgttataaacctcaaacttaa 24059729  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 17136968 - 17136908
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||||||| | ||||||||||||||  || |||||||||  || |||||||||||    
T  17136968 aaagacttatgtgtgaccaaaataacttaaagaattaatctgttacaaacctcaaacttaa 17136908  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 1173135 - 1173076
Alignment:
Q  304 aaagacttatgtgtaagcaaaataacttaaaagataaatctgttatcaatctcaaacttaa 364  Q
    |||||||||||||| | ||||||||||||||| |  |||||||||| || |||||||||||    
T  1173135 aaagacttatgtgtgaccaaaataacttaaaa-actaatctgttataaacctcaaacttaa 1173076  T

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