View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_37 (Length: 398)
Name: NF15932_high_37
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_37 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 36 - 398
Target Start/End: Original strand, 36290884 - 36291246
Alignment:
| Q |
36 |
gacagctttgggatgttaggtaaagccgaatagtataataactcttcaaatacacacagtcacacacggttaagctgaaactgttctggttttgcaacat |
135 |
Q |
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| T |
36290884 |
gacagctttgggatgttaggtaaagccgaatagtataataactcttcaaatacacacagtcacacacggttaagctgaaactgttctggttttgcaacat |
36290983 |
T |
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| Q |
136 |
tccgaaactgtcattgaacacgtacaagtgatagtgaagtttgtcttgttagtacaacattaattcataatcttcttattattgagatgttactatatat |
235 |
Q |
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| T |
36290984 |
tccgaaactgtcattgaacacgtacaagtgatagtgaagtttgtcttgttagtacaacattaattcataatcttcttattattgagatgttactatatat |
36291083 |
T |
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| Q |
236 |
atatgatgcttcttttactagtgctttctaaaagaaactacataatcaagcttttgcaggccttcttcatcggataatatggtgccacagtttgcaatca |
335 |
Q |
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| T |
36291084 |
atatgatgcttcttttactagtgctttctaaaagaaactacataatcaagcttttgcaggccttcttcatcggataatatggtgccacagtttgcaatca |
36291183 |
T |
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| Q |
336 |
agaaggatgtcactgaagtaatattttttagagcacttatttttgtacacacttcatattctt |
398 |
Q |
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| T |
36291184 |
agaaggatgtcactgaagtaatattttttagagcacttatttttgtacacacttcattttctt |
36291246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 36286062 - 36286153
Alignment:
| Q |
271 |
aactacataatcaagcttttgcaggccttcttcatcggataatatggtgccacagtttgcaatcaagaaggatgtcactgaagtaatatttt |
362 |
Q |
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| T |
36286062 |
aactacacaatcaagcttttgcaggccttcttcatcagataacatggagccacaatgtgcaatcaagaaagatgtcactgaagtaatatttt |
36286153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 36285835 - 36285905
Alignment:
| Q |
46 |
ggatgttaggtaaagccgaatagtataataactcttcaaatacacacagtcacacacggttaagctgaaac |
116 |
Q |
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| T |
36285835 |
ggatgttagctaaagccgaaaagaataataattcttcaaatacacacaatcacacacggtcaagctgaaac |
36285905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 36280537 - 36280612
Alignment:
| Q |
287 |
ttttgcaggccttcttcatcggataatatggtgccacagtttgcaatcaagaaggatgtcactgaagtaatatttt |
362 |
Q |
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| T |
36280537 |
ttttgcaggctttcttcatcagataacatggagcaacactttgcaatcaagaaggatgtcactcaagtattatttt |
36280612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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