View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_39 (Length: 391)
Name: NF15932_high_39
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 31696427 - 31696531
Alignment:
| Q |
82 |
tagcatagcataataacggataaaataaaagataataagaggatcggattgcatgagatccaaaatctaatttagcagctcgctaagagtgccaacgtac |
181 |
Q |
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||||||||||||||| |||||||||||||| || |||||| |||||||| ||||||||||| ||||| || |||||||| ||||||||| | ||| |
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| T |
31696427 |
tagcatagcataatagaagataaaataaaagacaa---gaggattggattgcacgagatccaaaacctaatctatgagctcgctgagagtgccatcatac |
31696523 |
T |
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| Q |
182 |
ctgaacaa |
189 |
Q |
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|||||||| |
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| T |
31696524 |
ctgaacaa |
31696531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 35163682 - 35163641
Alignment:
| Q |
244 |
aagaaaagcaaatagatatttttgttaggagttagctaacat |
285 |
Q |
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| T |
35163682 |
aagaaaagcaaatagatatttttgttaggagttagctaacat |
35163641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 39841811 - 39841770
Alignment:
| Q |
244 |
aagaaaagcaaatagatatttttgttaggagttagctaacat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39841811 |
aagaaaagcaaatagatatttttgttaggagttagctaacat |
39841770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 44796501 - 44796542
Alignment:
| Q |
244 |
aagaaaagcaaatagatatttttgttaggagttagctaacat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
44796501 |
aagaaaagcaaatagatatttttgttaggagttagctaacat |
44796542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 39846863 - 39846823
Alignment:
| Q |
244 |
aagaaaagcaaatagatatttttgttaggagttagctaacat |
285 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39846863 |
aagaaaagcaaatagatatttt-gttaggagttagctaacat |
39846823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 35163624 - 35163571
Alignment:
| Q |
318 |
ccctttttcggtagacaaaaatctcaattgctattcacatgaaatgtatagtag |
371 |
Q |
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|||||||||| | ||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
35163624 |
ccctttttcgttgaacaaaaaactcaattgatattcacatgaaatgtaaagtag |
35163571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 39841753 - 39841700
Alignment:
| Q |
318 |
ccctttttcggtagacaaaaatctcaattgctattcacatgaaatgtatagtag |
371 |
Q |
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|||||||||| | ||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
39841753 |
ccctttttcgttgaacaaaaaactcaattgatattcacatgaaatgtaaagtag |
39841700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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