View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_42 (Length: 381)

Name: NF15932_high_42
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_42
NF15932_high_42
[»] chr1 (2 HSPs)
chr1 (114-260)||(3144156-3144302)
chr1 (20-61)||(21444802-21444843)
[»] chr2 (2 HSPs)
chr2 (18-119)||(11689544-11689647)
chr2 (18-119)||(11721412-11721515)
[»] chr4 (3 HSPs)
chr4 (14-70)||(7280424-7280480)
chr4 (20-70)||(7280263-7280313)
chr4 (20-61)||(11858113-11858154)
[»] scaffold0181 (1 HSPs)
scaffold0181 (20-61)||(9427-9468)
[»] chr8 (3 HSPs)
chr8 (20-121)||(11291028-11291131)
chr8 (239-293)||(17855110-17855164)
chr8 (20-119)||(22890101-22890201)
[»] chr3 (1 HSPs)
chr3 (18-61)||(30380909-30380952)
[»] scaffold0100 (1 HSPs)
scaffold0100 (20-61)||(31083-31124)
[»] chr6 (2 HSPs)
chr6 (20-61)||(1215070-1215111)
chr6 (20-61)||(33648631-33648672)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 3144156 - 3144302
Alignment:
Q  114 ataaaagcagtatacaatgtatatttgtagttgtatctatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 213  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144156 ataaaagcagtatagaatgtatatttgtagttgtatacatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 3144255  T
Q  214 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcag 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3144256 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcag 3144302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 21444802 - 21444843
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggatta 61  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  21444802 ttttaagtgattaaattttgacacggcaaaatgccaggatta 21444843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 11689647 - 11689544
Alignment:
Q  18 aattttaagtgattaaattttgacatgacaaaatgccaggattagagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtat 115  Q
    |||||||||||||||||||||| || ||||||||||| |||||| ||| ||||  |||||| |||||||||||| ||| ||  | ||||||||||| |||    
T  11689647 aattttaagtgattaaattttggcaggacaaaatgccgggattaaagaatacagggatcaatttttaaatgacccctatttccaaggactaaacacatat 11689548  T
Q  116 aaaa 119  Q
    ||||    
T  11689547 aaaa 11689544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 11721412 - 11721515
Alignment:
Q  18 aattttaagtgattaaattttgacatgacaaaatgccaggattagagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtat 115  Q
    |||||||||||||||||||||| || || |||||| |||||||| ||| ||||  |||||| |||||||||||| ||| ||  |  |||||||||| |||    
T  11721412 aattttaagtgattaaattttggcaggataaaatgtcaggattaaagaatacagggatcaatttttaaatgacccctatttccaaagactaaacacatat 11721511  T
Q  116 aaaa 119  Q
    ||||    
T  11721512 aaaa 11721515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 7280424 - 7280480
Alignment:
Q  14 acataattttaagtgattaaattttgacatgacaaaatgccaggattagagattaca 70  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| |||| ||| ||||    
T  7280424 acataattttaagtgattaaattttgacatggcaaaatgtcagaattaaagaataca 7280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 7280313 - 7280263
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggattagagattaca 70  Q
    ||||||||||||||||||||||| | ||||||| |||||||| ||| ||||    
T  7280313 ttttaagtgattaaattttgacagggcaaaatgacaggattaaagaataca 7280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 11858113 - 11858154
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggatta 61  Q
    ||||||||||||||||||||||| |  |||||||||||||||    
T  11858113 ttttaagtgattaaattttgacagggtaaaatgccaggatta 11858154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 9427 - 9468
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggatta 61  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  9427 ttttaagtgattaaattttgacaggacaaaataccaggatta 9468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 11291131 - 11291028
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggattagagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataa 117  Q
    |||||||||||||||||||| |||| ||||||  ||||||||  || |||| || | |  |||||||||||  ||| || |||| |||||||||||||||    
T  11291131 ttttaagtgattaaattttggcatggcaaaatatcaggattaaggaatacaagaaccattttttaaatgactcctatttgtaggaactaaacacgtataa 11291032  T
Q  118 aagc 121  Q
    ||||    
T  11291031 aagc 11291028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 17855110 - 17855164
Alignment:
Q  239 aatagaaagaaagaaacagcagctccaacaaataatgaacgatttatgatatgat 293  Q
    |||||||||||||||| |||||  ||||||||||| ||| | |||||||||||||    
T  17855110 aatagaaagaaagaaatagcagacccaacaaataaggaaagttttatgatatgat 17855164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 22890201 - 22890101
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggattagagattacacgatca-attttaaatgacctctagttttagggactaaacacgtataaa 118  Q
    ||||||||||||||||||||||  ||||||||| || |||||  || |||| || ||  |||||||||||| ||| ||   |||||||||||| ||||||    
T  22890201 ttttaagtgattaaattttgacgggacaaaatgtcatgattaaggaatacaagaccattttttaaatgacccctatttaccgggactaaacacatataaa 22890102  T
Q  119 a 119  Q
    |    
T  22890101 a 22890101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 30380952 - 30380909
Alignment:
Q  18 aattttaagtgattaaattttgacatgacaaaatgccaggatta 61  Q
    |||||||| |||||||||||||||||||||||||  ||||||||    
T  30380952 aattttaaatgattaaattttgacatgacaaaatatcaggatta 30380909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 31124 - 31083
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggatta 61  Q
    ||||||||||||||||||||||| |||||| |||||| ||||    
T  31124 ttttaagtgattaaattttgacaggacaaattgccagaatta 31083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 1215111 - 1215070
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggatta 61  Q
    ||||||||||||||||||||||| | ||||||| ||||||||    
T  1215111 ttttaagtgattaaattttgacagggcaaaatgtcaggatta 1215070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 33648672 - 33648631
Alignment:
Q  20 ttttaagtgattaaattttgacatgacaaaatgccaggatta 61  Q
    ||||||||||||||||||| |||||||||||| ||| |||||    
T  33648672 ttttaagtgattaaattttcacatgacaaaataccatgatta 33648631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University