View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_46 (Length: 362)

Name: NF15932_high_46
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_46
NF15932_high_46
[»] chr7 (25 HSPs)
chr7 (114-352)||(20335850-20336087)
chr7 (1-46)||(20336152-20336197)
chr7 (295-355)||(26459426-26459486)
chr7 (295-355)||(43215184-43215244)
chr7 (295-358)||(2446308-2446371)
chr7 (295-354)||(25021352-25021411)
chr7 (295-355)||(22760863-22760923)
chr7 (294-354)||(23735244-23735304)
chr7 (295-355)||(42836017-42836077)
chr7 (295-354)||(43590907-43590966)
chr7 (293-351)||(23301622-23301680)
chr7 (295-355)||(17041028-17041088)
chr7 (295-355)||(18363696-18363756)
chr7 (295-355)||(23552118-23552178)
chr7 (295-355)||(30442488-30442548)
chr7 (295-355)||(39631844-39631904)
chr7 (302-354)||(48984146-48984198)
chr7 (295-358)||(2962460-2962522)
chr7 (295-349)||(41487362-41487416)
chr7 (298-351)||(15905693-15905746)
chr7 (298-351)||(45976943-45976996)
chr7 (295-355)||(7801180-7801240)
chr7 (296-352)||(35513467-35513523)
chr7 (302-354)||(36803644-36803696)
chr7 (114-174)||(42731224-42731284)
[»] chr4 (24 HSPs)
chr4 (114-253)||(4621996-4622130)
chr4 (295-355)||(31759674-31759734)
chr4 (295-355)||(8030220-8030280)
chr4 (295-355)||(19680804-19680864)
chr4 (295-355)||(37109367-37109427)
chr4 (295-352)||(19238596-19238653)
chr4 (298-354)||(7292815-7292871)
chr4 (114-166)||(7672764-7672816)
chr4 (295-358)||(46545711-46545774)
chr4 (295-349)||(15180741-15180795)
chr4 (295-355)||(7949470-7949530)
chr4 (312-352)||(13015444-13015484)
chr4 (307-351)||(13265128-13265172)
chr4 (295-358)||(51250535-51250598)
chr4 (293-355)||(4249175-4249237)
chr4 (317-355)||(49576910-49576948)
chr4 (117-166)||(3257611-3257660)
chr4 (295-355)||(37274475-37274536)
chr4 (291-348)||(55427223-55427280)
chr4 (294-354)||(4911249-4911309)
chr4 (299-351)||(13901746-13901798)
chr4 (319-355)||(23377980-23378016)
chr4 (295-355)||(31826609-31826669)
chr4 (295-355)||(37720230-37720290)
[»] chr1 (24 HSPs)
chr1 (188-253)||(44011875-44011940)
chr1 (295-355)||(31794280-31794340)
chr1 (295-354)||(9165212-9165271)
chr1 (296-351)||(18459251-18459307)
chr1 (295-355)||(36371470-36371530)
chr1 (214-253)||(5286586-5286625)
chr1 (295-358)||(45235392-45235455)
chr1 (295-354)||(52116798-52116857)
chr1 (298-355)||(15786336-15786393)
chr1 (295-352)||(21268012-21268069)
chr1 (295-355)||(6122794-6122854)
chr1 (295-355)||(10526823-10526883)
chr1 (114-173)||(36928212-36928271)
chr1 (295-354)||(51703779-51703838)
chr1 (295-353)||(4566548-4566606)
chr1 (297-355)||(33700789-33700847)
chr1 (295-352)||(21547499-21547556)
chr1 (299-352)||(24047121-24047174)
chr1 (317-358)||(27476784-27476825)
chr1 (295-352)||(40257399-40257456)
chr1 (294-354)||(952510-952570)
chr1 (295-351)||(1690097-1690153)
chr1 (307-355)||(8177198-8177246)
chr1 (293-349)||(21694444-21694500)
[»] chr5 (20 HSPs)
chr5 (295-355)||(30883214-30883274)
chr5 (295-355)||(25627057-25627117)
chr5 (295-355)||(34984806-34984866)
chr5 (295-358)||(8278288-8278351)
chr5 (295-350)||(22737082-22737137)
chr5 (297-355)||(18596017-18596075)
chr5 (294-351)||(21549157-21549214)
chr5 (299-355)||(16436622-16436677)
chr5 (295-355)||(17028280-17028340)
chr5 (114-174)||(35996047-35996107)
chr5 (114-174)||(43259706-43259766)
chr5 (295-358)||(29075781-29075844)
chr5 (295-349)||(26598524-26598578)
chr5 (295-352)||(16773807-16773864)
chr5 (217-250)||(39797361-39797394)
chr5 (293-352)||(5390871-5390928)
chr5 (295-355)||(7918485-7918545)
chr5 (295-355)||(14285161-14285221)
chr5 (295-355)||(16457810-16457870)
chr5 (295-355)||(26078067-26078127)
[»] chr2 (22 HSPs)
chr2 (295-352)||(1729816-1729873)
chr2 (295-355)||(42327411-42327471)
chr2 (295-355)||(29503271-29503331)
chr2 (295-355)||(42602554-42602614)
chr2 (295-358)||(7799048-7799111)
chr2 (295-354)||(42922414-42922473)
chr2 (294-352)||(19016030-19016088)
chr2 (295-355)||(11062360-11062420)
chr2 (295-355)||(11251087-11251147)
chr2 (295-355)||(19322768-19322828)
chr2 (295-355)||(23052539-23052599)
chr2 (295-355)||(37480075-37480135)
chr2 (296-355)||(16918594-16918653)
chr2 (114-168)||(2375975-2376029)
chr2 (114-172)||(31099042-31099100)
chr2 (298-351)||(7667489-7667542)
chr2 (294-355)||(19244108-19244169)
chr2 (295-352)||(28846691-28846748)
chr2 (307-351)||(12994396-12994440)
chr2 (295-355)||(13803495-13803555)
chr2 (295-355)||(21195692-21195752)
chr2 (295-351)||(29197396-29197452)
[»] chr8 (25 HSPs)
chr8 (295-355)||(44780130-44780190)
chr8 (297-355)||(2203494-2203552)
chr8 (293-351)||(29431009-29431067)
chr8 (295-352)||(16852340-16852397)
chr8 (295-355)||(12988428-12988488)
chr8 (295-355)||(19703503-19703563)
chr8 (297-355)||(3624582-3624640)
chr8 (295-352)||(5264544-5264601)
chr8 (293-350)||(20994479-20994536)
chr8 (129-174)||(36700047-36700092)
chr8 (295-355)||(11819776-11819836)
chr8 (295-355)||(18540298-18540358)
chr8 (296-352)||(29858068-29858124)
chr8 (293-353)||(30483902-30483962)
chr8 (129-171)||(18605403-18605445)
chr8 (293-355)||(26688863-26688925)
chr8 (317-355)||(27750752-27750790)
chr8 (295-352)||(968362-968419)
chr8 (295-352)||(23874401-23874458)
chr8 (295-352)||(35641920-35641977)
chr8 (295-355)||(6436571-6436631)
chr8 (297-353)||(8794363-8794419)
chr8 (295-355)||(11793537-11793597)
chr8 (295-355)||(28783060-28783120)
chr8 (294-354)||(42188349-42188409)
[»] chr6 (10 HSPs)
chr6 (295-355)||(12188319-12188379)
chr6 (295-352)||(33549104-33549161)
chr6 (295-355)||(14199963-14200023)
chr6 (295-352)||(21418470-21418527)
chr6 (295-352)||(31623010-31623067)
chr6 (291-355)||(3779335-3779399)
chr6 (184-253)||(9081987-9082056)
chr6 (129-166)||(12852089-12852126)
chr6 (295-352)||(14557962-14558019)
chr6 (295-355)||(1056701-1056761)
[»] chr3 (21 HSPs)
chr3 (295-355)||(27093377-27093437)
chr3 (114-166)||(55216636-55216688)
chr3 (295-354)||(14339610-14339669)
chr3 (307-358)||(32651451-32651502)
chr3 (297-355)||(8390639-8390697)
chr3 (129-174)||(26661892-26661937)
chr3 (295-352)||(36720381-36720438)
chr3 (298-355)||(53412948-53413005)
chr3 (298-354)||(28928896-28928952)
chr3 (295-355)||(46518628-46518688)
chr3 (295-355)||(47810760-47810820)
chr3 (295-354)||(4222141-4222200)
chr3 (312-355)||(8075143-8075186)
chr3 (294-353)||(16354910-16354969)
chr3 (295-358)||(26505374-26505437)
chr3 (294-352)||(31788989-31789047)
chr3 (295-351)||(2597240-2597296)
chr3 (295-355)||(8170672-8170732)
chr3 (295-355)||(14186648-14186707)
chr3 (295-355)||(30311306-30311366)
chr3 (114-182)||(34607562-34607630)
[»] scaffold0258 (1 HSPs)
scaffold0258 (294-352)||(15342-15400)
[»] scaffold0002 (1 HSPs)
scaffold0002 (298-355)||(94987-95044)
[»] scaffold0122 (1 HSPs)
scaffold0122 (302-354)||(6936-6988)
[»] scaffold0016 (1 HSPs)
scaffold0016 (295-353)||(77620-77678)
[»] scaffold0126 (1 HSPs)
scaffold0126 (310-355)||(25363-25408)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 114 - 352
Target Start/End: Complemental strand, 20336087 - 20335850
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttcgaaacagtttggtttggttcggttcgaaacaattcggttta 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  20336087 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttagttcgaaacagtttgatttggttcggttcgaaacaattcggttta 20335988  T
Q  214 gttttaccttctaaaatttgattttgtttggtattttatannnnnnncaatgctaccaataataataggttggttcgattcaacccacttggattggtct 313  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  20335987 gttttaccttctaaaatttgattttgtttggtattttata-ttttttcaatgctaccaataataatagtttggttcgattcaacccacttgggttggtct 20335889  T
Q  314 agaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  20335888 agaggtattggcttgggacttgggagtgtgctcctcctc 20335850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20336197 - 20336152
Alignment:
Q  1 ttaaatgtaatatcttgtaaagaattccctctaaatcaggggtggg 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20336197 ttaaatgtaatatcttgtaaagaattccctctaaatcaggggtggg 20336152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 26459486 - 26459426
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaag 26459426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 43215184 - 43215244
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||||||| |||||||||||||||| | ||| ||||||||||||||||    
T  43215184 aacccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaag 43215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 2446308 - 2446371
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| |||||||   |||||||||||||||||||||| ||||||||||||| |||||    
T  2446308 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatc 2446371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 25021411 - 25021352
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| |||||||||||||||    
T  25021411 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaa 25021352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 22760863 - 22760923
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||||| | ||||||| |||||||| ||||| ||||||||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaag 22760923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 23735304 - 23735244
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||||||||||| ||| ||||| ||||||||||| | | ||||||||||||||||||||||    
T  23735304 caacccacttgggttgatctagtggtattggcttagaatttgggattgtgctcctcctcaa 23735244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 42836077 - 42836017
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| ||||||| ||||||||    
T  42836077 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcttcctcaag 42836017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 43590907 - 43590966
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||||| |||| |||| || | |||||||||||||||||||||| |||||||||||||||    
T  43590907 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaa 43590966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 23301680 - 23301622
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    ||||||||||||| |||| || | ||||||| |||||||||||||| ||||||||||||    
T  23301680 tcaacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctcct 23301622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 17041088 - 17041028
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||||||| || ||||||||||||  ||| | ||||||||||||||||    
T  17041088 aacccacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaag 17041028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 18363696 - 18363756
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| ||||| |||||| || |||||| ||||||||||||||||    
T  18363696 aacccacttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaag 18363756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 23552118 - 23552178
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| | ||||| |||||||| ||||| ||||||||||||||||    
T  23552118 aacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaag 23552178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 30442488 - 30442548
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| | || |||||||||||||||| ||||| | ||||||||||||||    
T  30442488 aacccacttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaag 30442548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 39631844 - 39631904
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| |  |||||||||||||    
T  39631844 aacccacttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaag 39631904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 48984198 - 48984146
Alignment:
Q  302 ttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||| ||| ||||| ||||| |||||||||||||||| |||||||||||||||    
T  48984198 ttgggttgctctagtggtataggcttgggacttgggagtgtgctcctcctcaa 48984146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 2962460 - 2962522
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| ||||||||| |||||||| |||| || || || |||||||||||||||||||    
T  2962460 aacccacttgg-ttggtctagtggtattggtttggaacctgtgagtgtgctcctcctcaagatc 2962522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 41487362 - 41487416
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctc 349  Q
    ||||||||||| |||| || | |||||||||||||||||||||| ||| ||||||    
T  41487362 aacccacttgggttggcctggtggtattggcttgggacttgggagtgttctcctc 41487416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 15905746 - 15905693
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    |||||||| |||| || | |||||||||||||||| ||||| ||||||||||||    
T  15905746 ccacttgggttggcctggcggtattggcttgggacctgggagtgtgctcctcct 15905693  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 45976996 - 45976943
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    |||||||| |||| |||| |||||||||||| ||| ||||| ||||||||||||    
T  45976996 ccacttgggttggcctagtggtattggcttgtgacctgggagtgtgctcctcct 45976943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 7801180 - 7801240
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| || | ||||||| |||||||| ||||| |||||||||| |||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaag 7801240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 35513467 - 35513523
Alignment:
Q  296 acccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||| |||| |||| |||| |||||| |||||||||||| || |||||||||||||    
T  35513467 acccatttgggttggcctagtggtatttgcttgggacttgagagtgtgctcctcctc 35513523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 36803696 - 36803644
Alignment:
Q  302 ttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||| ||||||||| ||||||| |||||||| ||||| | |||||||||||||    
T  36803696 ttgggttggtctagtggtattgacttgggacctgggagtatgctcctcctcaa 36803644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 42731284 - 42731224
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttcga 174  Q
    ||||||||||  || || |||| ||||||||||||||||||||| ||| |||||| |||||    
T  42731284 tactaacagtactgaaattgaattgaaacaattcggttcagttcgaaacagtttgattcga 42731224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 4622130 - 4621996
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttcgaaacagtttggtttggttcggttcgaaacaattcggttta 213  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||| ||||  ||||| | |||     |||| ||||| |      
T  4622130 tactaacagttatggaactgaactgaaacagtttggttcagttcaaaacagttcggttcgaaatagttcagtttgatgcgg-----aacagttcggctcg 4622036  T
Q  214 gttttaccttctaaaatttgattttgtttggtattttata 253  Q
     |||||||||||||||||   |||||||||||||||||||    
T  4622035 cttttaccttctaaaattcagttttgtttggtattttata 4621996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 31759734 - 31759674
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||    
T  31759734 aacccacttgggttgatctagtggtattggcttgggacttgggagtgtgctcctcctcaag 31759674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 8030280 - 8030220
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||||||||||  |||| ||||| |||||||||||||||| ||||||||||||||||    
T  8030280 aacccacttggattgccctagtggtataggcttgggacttgggagtgtgctcctcctcaag 8030220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 19680864 - 19680804
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||    
T  19680864 aacccacttggattggcctagtggtattcgcttgggacttgggagtgtgctcttcctcaag 19680804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 37109427 - 37109367
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaag 37109367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 19238653 - 19238596
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| |||| || | |||||||||||||||||||||| |||||||||||||    
T  19238653 aacccacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 19238596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 7292871 - 7292815
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||||||| ||||||||| ||||||||||||| || ||||| |||||||||||||||    
T  7292871 ccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaa 7292815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 7672816 - 7672764
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtt 166  Q
    ||||||||||| || ||||||||||||||||||| ||||| ||||||||||||    
T  7672816 tactaacagttgtgaaactgaactgaaacaattcagttcaattcaaaatagtt 7672764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 46545711 - 46545774
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| |||| |||| |||||||||||| ||| || || |||||||||||||||||||    
T  46545711 aacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatc 46545774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 15180741 - 15180795
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctc 349  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||| ||| ||||||    
T  15180741 aacccacttagattggtctagtggtattggcttgggacctgggagtgtactcctc 15180795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 7949530 - 7949470
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||||||  ||| |||| |||||||||||||||| | ||| ||||||||||||||||    
T  7949530 aacccacttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaag 7949470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 13015444 - 13015484
Alignment:
Q  312 ctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  13015444 ctagtggtattggcttgggacttgggagtgtgctcctcctc 13015484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 13265172 - 13265128
Alignment:
Q  307 ttggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||    
T  13265172 ttggcctagaggtattggcttgggacctgggaatgtgctcctcct 13265128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 51250598 - 51250535
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| |||| || | |||||||||||||||  ||||| |||||||| ||||||||||    
T  51250598 aacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatc 51250535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 4249175 - 4249237
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| | |||| |||| ||||| ||||||||| || ||| ||||||||||||||||    
T  4249175 tcaacccacttcgcttggcctagtggtataggcttgggattttggagtgtgctcctcctcaag 4249237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 49576948 - 49576910
Alignment:
Q  317 ggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  49576948 ggtattggctttggacttgggagtgtgctcctcctcaag 49576910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 3257611 - 3257660
Alignment:
Q  117 taacagttatggaactgaactgaaacaattcggttcagttcaaaatagtt 166  Q
    |||||||| || ||||||||||||||| ||||||||| ||||||| ||||    
T  3257611 taacagttttgaaactgaactgaaacagttcggttcatttcaaaacagtt 3257660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 37274536 - 37274475
Alignment:
Q  295 aacccacttggattggtctagaggta-ttggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| ||||  ||| |||||||||||| ||||| ||||||||||||||||    
T  37274536 aacccacttgggttggcctagtcgtaattggcttgggacctgggagtgtgctcctcctcaag 37274475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 55427280 - 55427223
Alignment:
Q  291 attcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcct 348  Q
    ||||||||||||||| |||| || | |||||||||||||||| ||||| | |||||||    
T  55427280 attcaacccacttgggttggcctggtggtattggcttgggacctgggagtctgctcct 55427223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 4911309 - 4911249
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||| ||||||| ||||||| | |||||| ||||||||||| ||| ||||||||| |||||    
T  4911309 caactcacttgggttggtctggtggtattagcttgggacttaggagtgtgctcctactcaa 4911249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 13901746 - 13901798
Alignment:
Q  299 cacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    ||||||| ||||||||| |||||||||||| ||| ||||| |||| |||||||    
T  13901746 cacttgggttggtctagtggtattggcttgagacctgggagtgtgttcctcct 13901798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 23377980 - 23378016
Alignment:
Q  319 tattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  23377980 tattggcttgggacctgggagtgtgctcctcctcaag 23378016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 31826609 - 31826669
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||  |||| ||||| ||||||||| ||| || ||||||||||||||||    
T  31826609 aacccacttgggttgccctagtggtataggcttgggatttgcgagtgtgctcctcctcaag 31826669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 37720290 - 37720230
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| || | | |||||||||||||| ||||| ||||| ||||||||||    
T  37720290 aacccacttgggttggcctggtgttattggcttgggacctgggagtgtgcccctcctcaag 37720230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 44011940 - 44011875
Alignment:
Q  188 ggttcggttcgaaacaattcggtttagttttaccttctaaaatttgattttgtttggtattttata 253  Q
    |||||||||||||||| ||| |||  ||||||||||||||||||| ||||||||||||||||||||    
T  44011940 ggttcggttcgaaacagttcagttcggttttaccttctaaaatttaattttgtttggtattttata 44011875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 31794340 - 31794280
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  31794340 aacccacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaag 31794280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 9165271 - 9165212
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| |||||||||||||||    
T  9165271 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaa 9165212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 18459307 - 18459251
Alignment:
Q  296 acccacttggattggtctagaggta-ttggcttgggacttgggattgtgctcctcct 351  Q
    |||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  18459307 acccacttgggttggtctagtggtaattggcttgggacttgggagtgtgctcctcct 18459251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 36371470 - 36371530
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| ||||||||||||| || ||||| ||||||||||||||||    
T  36371470 aacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaag 36371530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 5286586 - 5286625
Alignment:
Q  214 gttttaccttctaaaatttgattttgtttggtattttata 253  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5286586 gttttaccttctaaaattcgattttgtttggtattttata 5286625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 45235455 - 45235392
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| |||||||   |||||||| ||||||||||||| ||||||||||||| |||||    
T  45235455 aacccacttgggttggtctgatggtattggtttgggacttgggagtgtgctcctcctcgagatc 45235392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 52116857 - 52116798
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||||| |||| |||| || | |||||||||||||||||||||| |||||||||||||||    
T  52116857 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaa 52116798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 15786393 - 15786336
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||| |||||||||  ||||||||||||||  ||||| ||||||||||||||||    
T  15786393 ccacttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaag 15786336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 21268069 - 21268012
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||  |||| ||||  ||||||||||||||||||||| |||||||||||||    
T  21268069 aacccacttgagttgggctagtagtattggcttgggacttgggagtgtgctcctcctc 21268012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 6122794 - 6122854
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||| |||  |||| ||||| |||||||||||||||| ||||||||||||||||    
T  6122794 aacccatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaag 6122854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 10526823 - 10526883
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||| |||||| || |||||||||||||||| ||||| | ||||||||||||||    
T  10526823 aacccatttgggttggtccagtggtattggcttgggacctgggagtttgctcctcctcaag 10526883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 36928271 - 36928212
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttcg 173  Q
    |||||||| || | |||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  36928271 tactaacaattctagaactgaactaaaataattcggttcagttcaaaacagttcggttcg 36928212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 51703779 - 51703838
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||||| |||| ||||||||| ||||||||||||| |  ||||| |||||||||||||||    
T  51703779 aacccatttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctcaa 51703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 4566548 - 4566606
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctca 353  Q
    ||||||||||| |||| |||| | ||||||||||| || ||||| ||||||||||||||    
T  4566548 aacccacttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctca 4566606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 33700847 - 33700789
Alignment:
Q  297 cccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||| |||| |||| ||||||||||||| |  ||||| ||||||||||||||||    
T  33700847 cccacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaag 33700789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 21547556 - 21547499
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    |||| |||||| |||| |||| |||||||||||||||| |||||  ||||||||||||    
T  21547556 aaccgacttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctc 21547499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 24047174 - 24047121
Alignment:
Q  299 cacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||| |||||||   |||||||||||| ||||||||| |||||||||||||    
T  24047174 cacttgggttggtctcatggtattggcttgagacttgggagtgtgctcctcctc 24047121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 27476825 - 27476784
Alignment:
Q  317 ggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    |||||||||||||||||| ||| ||||||||||||| |||||    
T  27476825 ggtattggcttgggacttaggagtgtgctcctcctcgagatc 27476784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 40257399 - 40257456
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| |||| || | |||||||||||| ||| ||||| |||||||||||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctc 40257456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 952510 - 952570
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||||||||||  ||||||| | ||| |||||||||||| ||||| ||||||| |||||||    
T  952510 caacccacttgagttggtctggtggtgttggcttgggacctgggagtgtgctcatcctcaa 952570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 1690153 - 1690097
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    |||||||||| |||||||| | |||||||||||||||| ||||| | || |||||||    
T  1690153 aacccacttgaattggtctggtggtattggcttgggacctgggagtctgttcctcct 1690097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 8177246 - 8177198
Alignment:
Q  307 ttggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||| |||| |||||||||||||||  ||||| ||||||||||||||||    
T  8177246 ttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaag 8177198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 21694444 - 21694500
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctc 349  Q
    ||||||||||||| |||  || | |||||||||||| ||||||||| ||||||||||    
T  21694444 tcaacccacttgggttgacctggtggtattggcttgagacttgggagtgtgctcctc 21694500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 30883274 - 30883214
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  30883274 aacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaag 30883214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 25627057 - 25627117
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||    
T  25627057 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaag 25627117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 34984806 - 34984866
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  34984806 aacccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaag 34984866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 8278351 - 8278288
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| |||||||   |||||||||||||||||||||| ||||||||||||| |||||    
T  8278351 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatc 8278288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 22737082 - 22737137
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcc 350  Q
    ||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||    
T  22737082 aacccacttgggttggtctagtggtattggcttgggacttggaagtgtgctcctcc 22737137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 18596075 - 18596017
Alignment:
Q  297 cccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||||| ||||| |||||||||||| ||| ||||| ||||||||||||||||    
T  18596075 cccacttggattgatctagtggtattggcttgtgacctgggaatgtgctcctcctcaag 18596017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 21549214 - 21549157
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    |||||||||||| |||| |||| |||||||||||||||| ||||| ||||||||||||    
T  21549214 caacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcct 21549157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 16436622 - 16436677
Alignment:
Q  299 cacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||| |||| |||| |||||||||||||||||| ||| ||||||||||||||||    
T  16436622 cacttgggttggcctagtggtattggcttgggactt-ggagtgtgctcctcctcaag 16436677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 17028340 - 17028280
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||  ||||  ||||||| ||||||||||||| ||||||||||||||||    
T  17028340 aacccacttgggttgacctagttgtattgggttgggacttgggagtgtgctcctcctcaag 17028280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 35996107 - 35996047
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttcga 174  Q
    |||||||| || || ||||||||||||||| ||  ||||||||||||| ||||||||||||    
T  35996107 tactaacaattctgaaactgaactgaaacagttttgttcagttcaaaacagtttggttcga 35996047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 43259706 - 43259766
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttcga 174  Q
    ||||||||||| || || |||||||||||||||| ||||||||| ||| ||||| ||||||    
T  43259706 tactaacagttctgaaattgaactgaaacaattcagttcagttcgaaacagtttagttcga 43259766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 29075781 - 29075844
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| || | |||| |||||||||||||||  ||||| ||||||||||||| |||||    
T  29075781 aacccacttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcgagatc 29075844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 26598524 - 26598578
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctc 349  Q
    |||||||||||||||| |||| |||||||||||||||  || || ||||||||||    
T  26598524 aacccacttggattggcctagtggtattggcttgggatctgagagtgtgctcctc 26598578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 16773807 - 16773864
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||  ||||||| | ||||||| |||||||| ||||| |||||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctc 16773864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 39797361 - 39797394
Alignment:
Q  217 ttaccttctaaaatttgattttgtttggtatttt 250  Q
    ||||||||||||||| ||||||||||||||||||    
T  39797361 ttaccttctaaaattcgattttgtttggtatttt 39797394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 5390928 - 5390871
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    |||||||| |||| |||| |||| |||||||||||||| |||||||  ||||||||||||    
T  5390928 tcaacccatttgggttggcctagtggtattggcttggggcttggga--gtgctcctcctc 5390871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 7918545 - 7918485
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| ||||||||||||| || ||||| ||  ||||||||||||    
T  7918545 aacccacttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaag 7918485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 14285161 - 14285221
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| | || || |||||||||| || ||||| ||||||||||||||||    
T  14285161 aacccacttgggttggccgagtggaattggcttggaacctgggagtgtgctcctcctcaag 14285221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 16457810 - 16457870
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||| | |||| || | |||||||||||||||| | ||| ||||||||||||||||    
T  16457810 aacccacttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaag 16457870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 26078127 - 26078067
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||| ||||||||||||| | |||| ||| |||||    
T  26078127 aacccacttgggttggcctagtggtattggtttgggacttgggagtatgcttctcttcaag 26078067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 1729816 - 1729873
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||||    
T  1729816 aacccacttgggttgggctagtggtattggcttgggacttgggagtgtgctcctcctc 1729873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 42327471 - 42327411
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaag 42327411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 29503271 - 29503331
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||| ||||||| ||||| ||||||||||||||||    
T  29503271 aacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaag 29503331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 42602554 - 42602614
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| ||||||||| ||||||    
T  42602554 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaag 42602614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 7799111 - 7799048
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    ||||||||||| |||  || | |||||||||||||||||||||| ||||||||||||| |||||    
T  7799111 aacccacttgggttgtcctggtggtattggcttgggacttgggagtgtgctcctcctcgagatc 7799048  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 42922414 - 42922473
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    ||||||||||| |||| |||| ||||||||||||| || ||||| |||||||||||||||    
T  42922414 aacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaa 42922473  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 19016030 - 19016088
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    |||||||||||| |||||||   |||||||||||| ||||||||| |||||||||||||    
T  19016030 caacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctc 19016088  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 11062360 - 11062420
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| | ||||||||||| |||||||| |||||| |||||||||    
T  11062360 aacccacttgggttggcctagtgatattggcttggaacttgggagtgtgcttctcctcaag 11062420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 11251087 - 11251147
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||| | ||||  ||| |||||||||||||||||||| | ||||||||||||||||    
T  11251087 aacccacttaggttggcttagtggtattggcttgggacttggaagtgtgctcctcctcaag 11251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 19322768 - 19322828
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||| ||||| |||||||| ||||||| ||||| |||||||||| |||||    
T  19322768 aacccacttgggttgatctagtggtattggtttgggacctgggagtgtgctcctcttcaag 19322828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 23052599 - 23052539
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||| | |||| || | |||||||||||||||||||||| |||||| |||||||||    
T  23052599 aacccacttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaag 23052539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 37480075 - 37480135
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| || | |||||||||||||||| || || ||||||||||||||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaag 37480135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 16918653 - 16918594
Alignment:
Q  296 acccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||||| |||| |||| |||||||| ||||||  ||||| ||||||||||||||||    
T  16918653 acccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaag 16918594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 2376029 - 2375975
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttg 168  Q
    |||||||| || || || ||||||||||||||| |||||||||||||| ||||||    
T  2376029 tactaacaattctgaaattgaactgaaacaatttggttcagttcaaaacagtttg 2375975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 31099100 - 31099042
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttc 172  Q
    |||||||| || || ||||||||| ||||| ||||||||||||||||| |||| |||||    
T  31099100 tactaacaattctgaaactgaactaaaacagttcggttcagttcaaaacagttcggttc 31099042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 7667542 - 7667489
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    |||||||| ||||||  | | |||||||||||||||||||| ||||||||||||    
T  7667542 ccacttgggttggtcgggtgatattggcttgggacttgggagtgtgctcctcct 7667489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 19244108 - 19244169
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||||||| ||||||||  ||||||| |||||||| || || ||||||||||| ||||    
T  19244108 caacccacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaag 19244169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 28846691 - 28846748
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||| | ||| ||||| ||||||| |||||||| ||||| |||||||||||||    
T  28846691 aacccacttaggttgatctagtggtattgacttgggacctgggagtgtgctcctcctc 28846748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 12994440 - 12994396
Alignment:
Q  307 ttggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    ||||||||| ||||||| |||||||| ||||| ||||||||||||    
T  12994440 ttggtctagtggtattgacttgggacctgggagtgtgctcctcct 12994396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 13803495 - 13803555
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||| ||| ||||| | |||||||||| ||||| ||| ||||||||||||||||    
T  13803495 aacccatttgggttgatctagtgatattggcttgagacttaggagtgtgctcctcctcaag 13803555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 21195752 - 21195692
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||| |||  |||| ||||| ||||||| |||||||| ||||||||||||||||    
T  21195752 aacccatttgggttgccctagtggtataggcttggaacttgggagtgtgctcctcctcaag 21195692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 29197452 - 29197396
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    ||||||||||| ||||  | | ||||||| |||||||||||||| ||||||||||||    
T  29197452 aacccacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctcct 29197396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 44780190 - 44780130
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| || ||||||||||||||||||| ||||||||||||||||    
T  44780190 aacccacttgggttggcctagtggcattggcttgggacttgggagtgtgctcctcctcaag 44780130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 2203494 - 2203552
Alignment:
Q  297 cccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaag 2203552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 29431009 - 29431067
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    ||||||||||||| |||| || | |||||||||||||||||||||| ||||||||||||    
T  29431009 tcaacccacttgggttggcctggcggtattggcttgggacttgggagtgtgctcctcct 29431067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 16852340 - 16852397
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| |||||||||||||    
T  16852340 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 16852397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 12988428 - 12988488
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||||||||||| |||| ||||||||||||| || ||| | ||||||||||||||||    
T  12988428 aacccacttggattggcctagtggtattggcttggaacctggaagtgtgctcctcctcaag 12988488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 19703563 - 19703503
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| || || ||||||||||||||||    
T  19703563 aacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaag 19703503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 3624582 - 3624640
Alignment:
Q  297 cccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||| |||| |||| |||||||||||||||| ||||| |||||||||| |||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaag 3624640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 5264544 - 5264601
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| |||| |||| ||||||||||||| || ||||| |||||||||||||    
T  5264544 aacccacttgggttggcctagtggtattggcttggaacctgggaatgtgctcctcctc 5264601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 20994536 - 20994479
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcc 350  Q
    ||||||||||||| |||| |||| ||||||| |||||||| ||||| |||||||||||    
T  20994536 tcaacccacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctcc 20994479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 36700047 - 36700092
Alignment:
Q  129 aactgaactgaaacaattcggttcagttcaaaatagtttggttcga 174  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  36700047 aactgaactaaaacaattcggttcatttcaaaacagtttggttcga 36700092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 11819776 - 11819836
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||| |||  |||| ||||| |||||||||||||||| ||||||||||||||||    
T  11819776 aacccatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaag 11819836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 18540298 - 18540358
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| ||| || |||||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaag 18540358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 29858124 - 29858068
Alignment:
Q  296 acccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||||||| || | ||||||||||||||||  |||| |||||||||||||    
T  29858124 acccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctc 29858068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 30483962 - 30483902
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctca 353  Q
    ||||||||||||| |||| | || |||||||||||||||  ||||| ||||||||||||||    
T  30483962 tcaacccacttgggttggcccagtggtattggcttgggatatgggagtgtgctcctcctca 30483902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 18605445 - 18605403
Alignment:
Q  129 aactgaactgaaacaattcggttcagttcaaaatagtttggtt 171  Q
    ||||||||||||||||||| |||| |||||||| |||||||||    
T  18605445 aactgaactgaaacaattcagttcggttcaaaacagtttggtt 18605403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 26688863 - 26688925
Alignment:
Q  293 tcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||||| |||| || | ||| |||||||||||| | ||| ||||||||||||||||    
T  26688863 tcaacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaag 26688925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 27750752 - 27750790
Alignment:
Q  317 ggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  27750752 ggtataggcttgggacttgggagtgtgctcctcctcaag 27750790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 968362 - 968419
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||  |||| || | |||||||||||||||| ||||| |||||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctc 968419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 23874458 - 23874401
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| | ||| |||||||    
T  23874458 aacccacttgggttggcctagtggtattggcttgggacctgggaatctgcgcctcctc 23874401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 35641977 - 35641920
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| ||||||| | ||||| |||||| || |||||| |||||||||||||    
T  35641977 aacccacttgggttggtctggtggtatcggcttgagatttgggagtgtgctcctcctc 35641920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 6436631 - 6436571
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||  || | |||||||||||||||||| ||| ||||||||||| ||||    
T  6436631 aacccacttgggttgccctggtggtattggcttgggacttaggagtgtgctcctccgcaag 6436571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 8794419 - 8794363
Alignment:
Q  297 cccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctca 353  Q
    ||||||||||||||  ||| ||||||||||||| || ||| | ||||||||||||||    
T  8794419 cccacttggattggcatagtggtattggcttggaacctggaagtgtgctcctcctca 8794363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 11793597 - 11793537
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||||| | ||| || ||||||||| | ||| ||||||||||||||||    
T  11793597 aacccacttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaag 11793537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 28783060 - 28783120
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||  | | |||||||||||| ||| ||||| ||||||||||||||||    
T  28783060 aacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaag 28783120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 42188349 - 42188409
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    ||||||||||||||||| ||   |||||||| ||| ||| | |||||||||||||||||||    
T  42188349 caacccacttggattggactgatggtattggtttgtgacctaggattgtgctcctcctcaa 42188409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 12188379 - 12188319
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||    
T  12188379 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaag 12188319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 33549104 - 33549161
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| ||||||| | |||||||||||||||| ||||| |||||||||||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctc 33549161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 14200023 - 14199963
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  14200023 aacccatttgggttgctctagaggtataggcttgagacttgggagtgtgctcctcctcaag 14199963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 21418470 - 21418527
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    |||||| |||| |||| || | |||||||||||||||||||||| |||||||||||||    
T  21418470 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 21418527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 31623067 - 31623010
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| ||||||  | |||||||||||||||| ||||| |||||||||||||    
T  31623067 aacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctc 31623010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 3779335 - 3779399
Alignment:
Q  291 attcaacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||||| | |||  |||| |||||||||||| ||||||||| ||||||||| ||||||    
T  3779335 attcaacccacttaggttgacctagtggtattggcttgagacttgggagtgtgctccttctcaag 3779399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 9081987 - 9082056
Alignment:
Q  184 gtttggttcggttcgaaacaattcggtttagttttaccttctaaaatttgattttgtttggtattttata 253  Q
    ||||||||||||| ||||| ||| ||||   ||||||||| || |||| ||||||||||||| |||||||    
T  9081987 gtttggttcggtttgaaactatttggttcgattttaccttttacaattcgattttgtttggttttttata 9082056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 12852089 - 12852126
Alignment:
Q  129 aactgaactgaaacaattcggttcagttcaaaatagtt 166  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  12852089 aactgaactgaaacagttcggttcggttcaaaatagtt 12852126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 14557962 - 14558019
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| ||||||| | ||| |||||||||||| ||| | |||||||||||||    
T  14557962 aacccacttgggttggtctggtggtgttggcttgggacctggaagtgtgctcctcctc 14558019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 1056761 - 1056701
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||  |||| ||||||||| |||||||||||| | ||||| ||||||||    
T  1056761 aacccacttgggttgacctagtggtattggcctgggacttgggagtatgctcatcctcaag 1056701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 27093437 - 27093377
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||    
T  27093437 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaag 27093377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 55216636 - 55216688
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtt 166  Q
    ||||||||||| || ||||||||||||||| ||| ||||||||||||||||||    
T  55216636 tactaacagttctgaaactgaactgaaacagttcagttcagttcaaaatagtt 55216688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 14339610 - 14339669
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||||| ||||||||| || | ||||||||||||||| |||||| |||||||||||||||    
T  14339610 aacccagttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctcaa 14339669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 32651502 - 32651451
Alignment:
Q  307 ttggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    |||| |||| |||||||||||||||| ||||| |||||||||||||||||||    
T  32651502 ttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatc 32651451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 8390639 - 8390697
Alignment:
Q  297 cccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||||||||||| ||||||| |||| ||||||| | ||||||| ||||||||    
T  8390639 cccacttggattggtctagtggtattgccttgagacttggaagtgtgctcttcctcaag 8390697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 26661892 - 26661937
Alignment:
Q  129 aactgaactgaaacaattcggttcagttcaaaatagtttggttcga 174  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||    
T  26661892 aactgaacagaaacaattcagttcagttcaaaatagtttagttcga 26661937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 36720381 - 36720438
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    ||||||||||| ||||||| | |||||||||||||||  ||||| |||||||||||||    
T  36720381 aacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctc 36720438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 53412948 - 53413005
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||| ||||||||| ||||||||||||  || ||||| ||||||||||||||||    
T  53412948 ccacttgggttggtctagtggtattggcttgtaacctgggagtgtgctcctcctcaag 53413005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 28928952 - 28928896
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    ||||||||||||| |||| |||||||||||||||  || || |||||||||||||||    
T  28928952 ccacttggattggcctagtggtattggcttgggatctgagagtgtgctcctcctcaa 28928896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 46518628 - 46518688
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||  ||| |||||||||||||||  ||||| ||||||||||||||||    
T  46518628 aacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaag 46518688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 47810820 - 47810760
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| ||||||| | ||||||||||| || ||||||| ||||||||||| ||||    
T  47810820 aacccacttgggttggtctggtggtattggctttggtcttgggagtgtgctcctccgcaag 47810760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 4222141 - 4222200
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    ||||||||||| ||||  ||| |||||||||||||||  ||||| |||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaa 4222200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 8075186 - 8075143
Alignment:
Q  312 ctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||    
T  8075186 ctagtggtataggcttgggacttgggagtgtgctcctcctcaag 8075143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 16354969 - 16354910
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctca 353  Q
    |||||||||||| |||| |||| ||||||||||||| || || || ||||||||||||||    
T  16354969 caacccacttgggttggcctagtggtattggcttggaacctgtgagtgtgctcctcctca 16354910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 26505437 - 26505374
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaagatc 358  Q
    |||||||||||||||||| || ||||| |||||||||  ||| | |||||||||| ||||||||    
T  26505437 aacccacttggattggtccagtggtataggcttgggatatggaagtgtgctcctcttcaagatc 26505374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 31789047 - 31788989
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    |||||||||||| |||| |||| | |||||||||||||  ||||| |||||||||||||    
T  31789047 caacccacttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctc 31788989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 2597296 - 2597240
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcct 351  Q
    ||||||||||| ||||||| | ||||||||||| ||| || ||| ||||||||||||    
T  2597296 aacccacttgggttggtctggtggtattggcttcggatttaggagtgtgctcctcct 2597240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 8170672 - 8170732
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||| |||| |||| ||||||||||||  |||||||| ||||||||| ||||||    
T  8170672 aacccatttgggttggcctagtggtattggcttgaaacttgggagtgtgctcctactcaag 8170732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 14186648 - 14186707
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||||||| |||| |||| ||||||| |||||||| | ||| ||||||||||||||||    
T  14186648 aacccacttgggttggcctagtggtattgtcttgggacct-ggagtgtgctcctcctcaag 14186707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 30311306 - 30311366
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    ||||||| ||| |||| |||| ||||| |||||||||  ||||| ||||||||||||||||    
T  30311306 aacccacctgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaag 30311366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 34607630 - 34607562
Alignment:
Q  114 tactaacagttatggaactgaactgaaacaattcggttcagttcaaaatagtttggttcgaaacagttt 182  Q
    ||||||||||| | ||| ||||| |||||| |||||||| ||||||   |||||||||| |||||||||    
T  34607630 tactaacagttctagaaatgaacggaaacagttcggttcggttcaattcagtttggttcaaaacagttt 34607562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 15400 - 15342
Alignment:
Q  294 caacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctc 352  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||| |||||||||||||    
T  15400 caacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctc 15342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 95044 - 94987
Alignment:
Q  298 ccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||||| |||| |||| ||||||||||||| || ||||| ||||||||||||||||    
T  95044 ccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaag 94987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 6988 - 6936
Alignment:
Q  302 ttggattggtctagaggtattggcttgggacttgggattgtgctcctcctcaa 354  Q
    |||| |||| |||| ||||||||||||||||| |||| |||||||||||||||    
T  6988 ttgggttggcctagtggtattggcttgggactggggagtgtgctcctcctcaa 6936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 77620 - 77678
Alignment:
Q  295 aacccacttggattggtctagaggtattggcttgggacttgggattgtgctcctcctca 353  Q
    |||||||||||||||||||   ||| |||| ||||||||| ||| ||||||||||||||    
T  77620 aacccacttggattggtctgatggtgttggtttgggactttggagtgtgctcctcctca 77678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 25408 - 25363
Alignment:
Q  310 gtctagaggtattggcttgggacttgggattgtgctcctcctcaag 355  Q
    |||||| |||||||||||| ||||||||| ||||||||| ||||||    
T  25408 gtctagtggtattggcttgagacttgggagtgtgctccttctcaag 25363  T

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