View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_high_48 (Length: 354)
Name: NF15932_high_48
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_48 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 10202997 - 10202718
Alignment:
| Q |
1 |
ggaccacaccaaaacaagaactaccacctctagtagccatgtttccaactccaggaatgggacatctcattccaatggtcgaattcgccaagagactctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202997 |
ggaccacaccaaaacaagaactaccacctctagtagccatgtttccaactccaggaatgggacatctcattccaatggtcgaattcgccaagagactctc |
10202898 |
T |
|
| Q |
101 |
caaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202897 |
caaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccac |
10202798 |
T |
|
| Q |
201 |
gtcttccttcctccggtcaccctctccgacctcccacccaacaccaaacccgaaacactcatgacagcaacaaccgttcg |
280 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
10202797 |
gtcttccttcctccgatcaccctctccgacctcccacccaacaccaaacccgaaacactcatgacagccaccaccgttcg |
10202718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10210070 - 10209807
Alignment:
| Q |
1 |
ggaccacaccaaaacaagaactaccacctctagtagccatgtttccaactccaggaatgggacatctcattccaatggtcgaattcgccaagagactctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10210070 |
ggaccacaccaaaacaagaactaccacctctagtagccatgtttccaactccaggaatgggacatctcattccaatggtcgaattcgccaagagactctc |
10209971 |
T |
|
| Q |
101 |
caaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10209970 |
caaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaacaaccgtactcacctccctacctcatggcatttcccac |
10209871 |
T |
|
| Q |
201 |
gtcttccttcctccggtcaccctctccgacctcccacccaacaccaaacccgaaacactcatga |
264 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10209870 |
gtcttcctccctccggtcaccctctccgacctcccacccaacaccaaacctgaaccactcatga |
10209807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University