View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_49 (Length: 353)
Name: NF15932_high_49
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 33632960 - 33633287
Alignment:
| Q |
14 |
atcaatatggattttcttattgtttgatgaatgagacaaatcagaccctttggtttatatgttcgacgcatctttataatagagactttgttatatctcg |
113 |
Q |
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| T |
33632960 |
atcaatatggattttcttattgtttgatgaatgagacaaatcagaccctttggtttatatgttcgacgcatctttataatagagactttgttatatctcg |
33633059 |
T |
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| Q |
114 |
acacatcttttgatctcaaaatattggtccattaacttgttattcctt-atctcaaaatgttaggcttggaaaatgctcatgtgcacgaaacatgtcatc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33633060 |
acacatcttttgatctcaaaatattggtccattaacttgttatgcctttatctcaaaatgttaggcttggaaaatgctcatgtgcacgaaacatgtcgtc |
33633159 |
T |
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| Q |
213 |
gtgtaaatcccacaaacaagtgttattctcttgtattttattctatttaaaatgactagtgatcaatttaattctgtagattcaaatacctcctctgatg |
312 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33633160 |
gtgtaaatcccacaaacaattgctattctcttgtattttattctatttaaaatgactagtgatcaatttaattctgtagattcaaataccacctctgatg |
33633259 |
T |
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| Q |
313 |
ctttaaaatctttctcaatcagtataat |
340 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33633260 |
ctttaaaatctttctcaatcagtataat |
33633287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 29444280 - 29444386
Alignment:
| Q |
179 |
ttggaaaatgctcatgtgcacgaaacatgtcatcgtgtaaatcccacaaacaagtgttattctcttgtattttattctatttaaaatgactagtgatcaa |
278 |
Q |
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|||| |||||||||||| |||||||||||| ||||| ||||||||| ||||| || ||| || |||||||| ||| |||||||||||||| || ||| |
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| T |
29444280 |
ttgggaaatgctcatgtacacgaaacatgttgtcgtgcaaatcccacgaacaattgctatactgttgtatttgatttgatttaaaatgactaaggaccaa |
29444379 |
T |
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| Q |
279 |
tttaatt |
285 |
Q |
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||||||| |
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| T |
29444380 |
tttaatt |
29444386 |
T |
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