View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_high_50 (Length: 349)
Name: NF15932_high_50
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_50 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 6500834 - 6501094
Alignment:
| Q |
11 |
cacagaacgccaaatgtgagttaaaagagcttgtaaggaagatattttgttcataccaatctctaagttggctttatatttcaatttaaagattttttcc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
6500834 |
cacagaacgccaaatgtgagttaaaagagcttgtaaggatgatattttgttcataccaaactctaacttggctttatatttcaatttcaagattttttcc |
6500933 |
T |
|
| Q |
111 |
tttgtaaaatagaataacctcgttgaagggttgagttcctcatcatcagagtgattcaacatctgattttgcgatgataaaaagtctaacccattagagt |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6500934 |
tttgtaaaatggaataacctcgttgaagggttgagttcctcatcatcacagtgattcaacatatgattttgcgatgataaaaagtctaacccattagagt |
6501033 |
T |
|
| Q |
211 |
gattattttgaggctccattgtggaaggaaatcgtatgggacgttgaatatcatttggaaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
6501034 |
gattattttgaggctccattgtggaaggaaatcgtatggaacgctgaatatcatttggaaa |
6501094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 8102830 - 8102944
Alignment:
| Q |
33 |
aaaagagcttgtaaggaagatattttgttcataccaatctctaagttggctttatatttcaatttaaagattttttcctttgtaaaatagaataacctcg |
132 |
Q |
| |
|
||||| ||||| | |||||||||||||||| |||| | |||||||||||||| ||||||||| | ||||||| |||||||| |||| |||||||| |
|
|
| T |
8102830 |
aaaagtgcttgaagggaagatattttgttcgtacccgtttctaagttggctttcaatttcaattgagagattttctcctttgtgaaatgaaataacctaa |
8102929 |
T |
|
| Q |
133 |
ttgaagggttgagtt |
147 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
8102930 |
ctgatgggttgagtt |
8102944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 40147097 - 40147017
Alignment:
| Q |
51 |
gatattttgttcataccaatctctaagttggctttatatttcaatttaaagattttttcctttgtaaaatagaataacctc |
131 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||| |||||| || | |||||| |||||||| |||| |||||||||| |
|
|
| T |
40147097 |
gatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaataacctc |
40147017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 7606756 - 7606819
Alignment:
| Q |
208 |
agtgattattttgaggctccattgtggaaggaaatcgtatgggacgttgaatatcatttggaaa |
271 |
Q |
| |
|
||||||||||||| ||||| | ||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7606756 |
agtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaa |
7606819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 7655747 - 7655673
Alignment:
| Q |
197 |
taacccattagagtgattattttgaggctccattgtggaaggaaatcgtatgggacgttgaatatcatttggaaa |
271 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||| || || ||||||||||||| || |||||||| |||||||||| |
|
|
| T |
7655747 |
taacccatcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttggaaa |
7655673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 39098046 - 39098088
Alignment:
| Q |
19 |
gccaaatgtgagttaaaagagcttgtaaggaagatattttgtt |
61 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
39098046 |
gccaaaggtgagttaaaagtgcttgtaaagaagatattttgtt |
39098088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 7629168 - 7629204
Alignment:
| Q |
235 |
aaggaaatcgtatgggacgttgaatatcatttggaaa |
271 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7629168 |
aaggaaatcgtatgggaagttgaataccatttggaaa |
7629204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 15190756 - 15190720
Alignment:
| Q |
235 |
aaggaaatcgtatgggacgttgaatatcatttggaaa |
271 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15190756 |
aaggaaatcgtatgggacgttgaattccatttggaaa |
15190720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University