View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_high_52 (Length: 339)
Name: NF15932_high_52
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_52 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 14042805 - 14042529
Alignment:
| Q |
1 |
ttcatccaccgtttattttctctgtttctaatttactgacctcaataacaaaacaaaaccctactaaccaaacttaaactgattgaaattcacagccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14042805 |
ttcatccaccgtttattttctctgtttctaatttactgacctcaataacaaaacaaaaccctactaaccaaaattaaactgattgaaattcacagccatc |
14042706 |
T |
|
| Q |
101 |
gaaactagggaaacagtggtaggagtgtttttatttctgagagctatgatgcaatgaacaattaaggttatagacagaataagatgttatatttaaaaga |
200 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14042705 |
gaaactagggaaagagtggtcggagtgtttttatttctgagagctatgatgcaatgaacaattaaggttatagacagaataagatgttatatttaaaaga |
14042606 |
T |
|
| Q |
201 |
aacaagtagtctataataaataagaggtgtaaacattgcatatatagttaagagaatggatctccttctataatattat |
279 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
14042605 |
aacaagtagtctataatagataagaggtgtaaacattgca--tataattaagagaatgaatcgtcttctataatattat |
14042529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 14039014 - 14038961
Alignment:
| Q |
224 |
gaggtgtaaacattgcatatatagttaagagaatggatctccttctataatattat |
279 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
14039014 |
gaggtgtaaacattgcatata--gttaagagaatggatcgccttctataatattat |
14038961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14081670 - 14081572
Alignment:
| Q |
1 |
ttcatccaccgtttattttctctgtttctaatttactgacctcaataacaaaacaaaaccctactaaccaaacttaaactgattgaaattcacagccatc |
100 |
Q |
| |
|
|||||||||| ||||||||| || ||| | ||||| || |||||||| |||||| | ||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
14081670 |
ttcatccaccatttattttcgctatttttcatttattggcctcaatatcaaaac-----cttactaaccaaaattaaactaattgaagttcacagccatc |
14081576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University