View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_57 (Length: 332)
Name: NF15932_high_57
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 77 - 317
Target Start/End: Original strand, 12056646 - 12056885
Alignment:
| Q |
77 |
atcaatttcaagacta-acttcacaaacaag-ataaacaggacacagcattttccacaaaccctaaacgacacatagagttcatcgtgacattgattgtg |
174 |
Q |
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| T |
12056646 |
atcaatttcaagaccagacttcacaaacaaggataaacaggacacagcattttccacaaaccataaacgacacatagagttcattgtgacattgattgtg |
12056745 |
T |
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| Q |
175 |
aattcatcatagcacttatgattgtaaatctcagatattttccaatagtaaaag-cttaca-aagnnnnnnnctttcatcaaaggaggatgtagaaactg |
272 |
Q |
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| T |
12056746 |
aattcatcgtagcacttatgattgtaaa--tcagatattttccaatagtaaaagccttacagaagtttttttctttcatcaa---aggatgtagaaactg |
12056840 |
T |
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| Q |
273 |
attgaacttcttgatcggaggtctcggtttcttcaagatcatact |
317 |
Q |
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| T |
12056841 |
attgaacttcttgatcggaggtctcggtttcttcaagatcatact |
12056885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 12054806 - 12054737
Alignment:
| Q |
11 |
cagagaggcaactgtgctcttagaggaatttcttgtgaaacttgagaatcatactttgaaaactgaatca |
80 |
Q |
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| T |
12054806 |
cagagaggcagttgtgctcttagaggaatttcttgtgaaacttgagaatcatactttgaaaactgaatca |
12054737 |
T |
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