View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_58 (Length: 326)
Name: NF15932_high_58
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_58 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13858424 - 13858106
Alignment:
| Q |
1 |
accacctcaacacacatattcttgaaactattccgaatctgctcggcgtttccatcctccggcagccaaaactgcgcgacaaagtcatcgttgaccatct |
100 |
Q |
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| T |
13858424 |
accacctcaacacacatatttttgaaactattccgaatctgctcggtgtttccatcctccggcagccaaaactgcgcgacaaagtcatcgttgaccatct |
13858325 |
T |
|
| Q |
101 |
cggtgtggtccactttgatcataagtctccttcagcctctcccagttta-tccaataagctacgatcttcaacttgcatcttcagcttctctttgttcac |
199 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
13858324 |
cggtgtggtccactttgatcctcagtctccttcagcctctcccagtttaatccaataagctaccatcttcaacttgcatcttcatcttctctttgttcac |
13858225 |
T |
|
| Q |
200 |
ccctttcagcaccgtttccacacaattcactcaacttggataatatagacctcaccaacttgcaccctccagataccaaagcacatactcctattacaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13858224 |
ccctttcagcaccgtttccacacaattcactcaacttggataatatagacctcaccaacttgcaccctccagataccaaagcacatactcctattacaca |
13858125 |
T |
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| Q |
300 |
acctattgctacggtctct |
318 |
Q |
| |
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||||||||||||||||||| |
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| T |
13858124 |
acctattgctacggtctct |
13858106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 248
Target Start/End: Complemental strand, 13895834 - 13895614
Alignment:
| Q |
36 |
aatctgctcggcgtttccatcctccggcagccaaaactgcgcgacaaagtcatcgttgaccatctcggtgtggtcc--------actttgatcataagtc |
127 |
Q |
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| T |
13895834 |
aatctgctcggtgtttccatcctccggcagccaaaactgcgcgacaaagtcactgtagaccctctcaacgcagtgccgcttgtaattttgatcatcattc |
13895735 |
T |
|
| Q |
128 |
tccttcagcctctcccagtttatccaataagctacgatcttcaacttgcatcttcagcttctctttgttcacccctttcagcaccgtttccacacaattc |
227 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13895734 |
tccttcagcctctcccagcttatccaataagctaccatcttcaacttgcatcttcagcttctctttgttcacccctttcagcaccgtttccatacaattc |
13895635 |
T |
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| Q |
228 |
actcaacttggataatataga |
248 |
Q |
| |
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|| || |||||||||||||| |
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| T |
13895634 |
gcttaatttggataatataga |
13895614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 13877479 - 13877379
Alignment:
| Q |
126 |
tctccttcagcctctcccagtttatccaataagctacgatcttcaacttgcatcttcagcttctctttgttcacccctttcagcaccgtttccacacaat |
225 |
Q |
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|||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13877479 |
tctccttcagcctctcccagcttatc-aataagctaccatctttaacttgcatcttcagcttctctttgttcacccctctcagcaccgtttccacacaat |
13877381 |
T |
|
| Q |
226 |
tc |
227 |
Q |
| |
|
|| |
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|
| T |
13877380 |
tc |
13877379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 13865056 - 13864938
Alignment:
| Q |
48 |
gtttccatcctccggcagccaaaactgcgcgacaaagtcatcgttgaccatctcggtgtggtcc--------actttgatcataagtctccttcagcctc |
139 |
Q |
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|||||||||||||| | ||||||||||||| ||||||| || || |||||||||| || || | | ||||||||| | |||||||||||||| |
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| T |
13865056 |
gtttccatcctccgactgccaaaactgcgcaacaaagtaattgtagaccatctcgatgcagtgccgcttgtaattttgatcatcattctccttcagcctc |
13864957 |
T |
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| Q |
140 |
tcccagtttatccaataag |
158 |
Q |
| |
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|||||| |||||||||||| |
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| T |
13864956 |
tcccagcttatccaataag |
13864938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 13877577 - 13877511
Alignment:
| Q |
36 |
aatctgctcggcgtttccatcctccggcagccaaaactgcgcgacaaagtcatcgttgaccatctcg |
102 |
Q |
| |
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|||||||| || ||||||||||||||||||| |||| ||| | ||||||||| || |||||||||| |
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| T |
13877577 |
aatctgcttggtgtttccatcctccggcagcaaaaagtgcaccacaaagtcactgtagaccatctcg |
13877511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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