View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_6 (Length: 636)
Name: NF15932_high_6
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 537; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 13 - 619
Target Start/End: Complemental strand, 33227303 - 33226699
Alignment:
| Q |
13 |
gagatgaatttaagtgtagaatgaatgttgagaaattgtaagtgtcgaaatatcattgttcattgaattatattttgcatgattgtgaaaattaaattta |
112 |
Q |
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| T |
33227303 |
gagatgaatttaagtgtagaatgaatgttgagaaattgtaagtgttgaaatatcattgttcattgaattatattttgcatgattgtgaaaattaaattta |
33227204 |
T |
|
| Q |
113 |
cgatacnnnnnnnnnnnnnnnttaagttaacgttgttgtgaaaacatttacatattcaatgggaaatagtcttcgccatgagctgaaaaatggaagattt |
212 |
Q |
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| T |
33227203 |
cgatacaaaaaaaaaaaaa--ttaagttaacgttgttgtgaaaacatttacatattcaatgggaaatagtcttcgccatgagctgaaaaatggaagattt |
33227106 |
T |
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| Q |
213 |
cttaatcattaccaggaaatatatgtgggaaccggtgctcgtataggaatagatatggattctgagacttggtcggtgtcatactccgcacgttggtcag |
312 |
Q |
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| T |
33227105 |
cttaatcattaccaggaaatatatgtgggaaccggtgctcgtataggaatagatatggattctgagacttggtcggtgtcatactccgcacgttggtcag |
33227006 |
T |
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| Q |
313 |
aaattcaattctcattaacgatattatatgacaaaaatggttacatcaatctattaaagttcagttttggagtacctatgtttattacatttgttataca |
412 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33227005 |
aagtttgattctcattaacgatattatatgacaaaaatggttacatcaatctattaaagttcagttttggagtacctatgtttattacatttgttataca |
33226906 |
T |
|
| Q |
413 |
cagatccaatacattgtattcctttaaccaagttcttcttgatccaattgaaattaaggactctggaaaatcttacggaacaaggtttgttaatgagact |
512 |
Q |
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| T |
33226905 |
cagatccaatacattgtattcctttaaccaagttcttcttgatccaattgaaattaaggactctggaaaatcttacggaacaaggtttgttaatgagact |
33226806 |
T |
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| Q |
513 |
aagaatcattggggaggggttacaaaaacgaatgttatatactttggggatgaatatgatgggaaccttattgtggtcgagcagaagagaaagagaggag |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33226805 |
aagaatcattggggaggggttacaaaaacgaatgttatatactttggggatgaatatgatgggaaccttattgtggtggagcagaagagaaagagaggag |
33226706 |
T |
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| Q |
613 |
ttgaaaa |
619 |
Q |
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||||||| |
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| T |
33226705 |
ttgaaaa |
33226699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 446 - 571
Target Start/End: Complemental strand, 33223906 - 33223781
Alignment:
| Q |
446 |
tcttcttgatccaattgaaattaaggactctggaaaatcttacggaacaaggtttgttaatgagactaagaatcattggggaggggttacaaaaacgaat |
545 |
Q |
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| T |
33223906 |
tcttcttaatcaaattgaaatcaaggactctggaagatcttacggaacaaggtttgtcaatgagactaagaatcattggggaggggttacaaaaacgaac |
33223807 |
T |
|
| Q |
546 |
gttatatactttggggatgaatatga |
571 |
Q |
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| T |
33223806 |
gttatataccttgggaatgaaaatga |
33223781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 33224386 - 33224187
Alignment:
| Q |
14 |
agatgaatttaagtgtagaatgaatgttgagaaattgtaagtgtcgaaatatcattgttcattgaattatattttgcatgattgtgaaaattaaatttac |
113 |
Q |
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|||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
33224386 |
agatgaatttaagtatagaatgaattttgagaaattatgagtgtcgaaatatcattgttcattgaatta---tttgcatgattgtgcaaattaaatttac |
33224290 |
T |
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| Q |
114 |
gatacnnnnnnnnnnnnnnnttaagttaacgttgttgtgaaaacatttacatattcaatgggaaatagtcttcgccatgagctga---aaaatggaagat |
210 |
Q |
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|||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||| |||| |||||||||||| |
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| T |
33224289 |
gata-aaaataaatatatatttaagttaacgttgttgcgaaaaca-ttatatattcaatgggaaatagttttcaccatgacctgaaagaaaatggaagat |
33224192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 33224083 - 33223981
Alignment:
| Q |
275 |
tgagacttggtcggtgtcatactccgcacgttggtcagaaattcaattctcattaacgatattatatgacaa---aaatggttacatcaatctattaaag |
371 |
Q |
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|||||||||||| ||||||||||||||| ||| |||||| |||| |||||||||| ||||||||||||| | |||||| |||||||||| |||||| |
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| T |
33224083 |
tgagacttggtctgtgtcatactccgcaggtttatcagaagttcatttctcattaatgatattatatgacgacgttaatggtgacatcaatctcttaaag |
33223984 |
T |
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| Q |
372 |
ttc |
374 |
Q |
| |
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||| |
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| T |
33223983 |
ttc |
33223981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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