View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_60 (Length: 315)
Name: NF15932_high_60
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_60 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 46952184 - 46952510
Alignment:
| Q |
1 |
cacgtgtctttcggatatacaacaaaggatatatttttgtttgtgataccttaaacagcaaatggaacttgtaaggatattggttggtagttggttcaag |
100 |
Q |
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| T |
46952184 |
cacgtgtctttcggatatacaacaaaggatatatttctgtttgtgataccttaaacaacaaatggaacttgtaaggatactggttggtagttggttcaag |
46952283 |
T |
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| Q |
101 |
tacaattgatgatg-----------aggtaatggttgttgccttataaatgataaaatcatatttttatgttctaccatggtagttagaaggctagaaca |
189 |
Q |
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| T |
46952284 |
tacaattgatgatagaatacacattaggtaatggttgttgccttataaatgataaaatcatatttttatgttctaccatggtagttagaaggctagaaca |
46952383 |
T |
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| Q |
190 |
aagtcatggtcatgaacaattttccagccacgcctaatcctagggataattgctctttatgaac-atttcttgagggacaagtaaaagcatgtcaaaaaa |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||||| |||||||||| |
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| T |
46952384 |
aagtcatggtcatgaacaattttccagccacgcctaatcatagggataattgctctttatgaacaatttttggagggacaagtaaaagaatgtcaaaaag |
46952483 |
T |
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| Q |
289 |
taggcaaattgtatatcttagcaatga |
315 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
46952484 |
taggcaaattttatatcttagcaatga |
46952510 |
T |
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